miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18979 5' -54.9 NC_004684.1 + 2702 0.68 0.6849
Target:  5'- cCCGGccuGGC-CGGu-GCCGGGGGCAa -3'
miRNA:   3'- -GGCUug-UCGaGCCuuUGGCCCUCGUg -5'
18979 5' -54.9 NC_004684.1 + 55785 0.69 0.609339
Target:  5'- uUCGAugGCGGCgugacCGGGugguCCGGuGAGCGCg -3'
miRNA:   3'- -GGCU--UGUCGa----GCCUuu--GGCC-CUCGUG- -5'
18979 5' -54.9 NC_004684.1 + 33881 0.69 0.641794
Target:  5'- aCCaGGCGGUgCGGGcgguGCCGGuGGGCGCg -3'
miRNA:   3'- -GGcUUGUCGaGCCUu---UGGCC-CUCGUG- -5'
18979 5' -54.9 NC_004684.1 + 54330 0.69 0.649365
Target:  5'- uCCGAgggcauagcacagcGCGGCggUGGAGauguuggcaaguGCCGGGGGCGg -3'
miRNA:   3'- -GGCU--------------UGUCGa-GCCUU------------UGGCCCUCGUg -5'
18979 5' -54.9 NC_004684.1 + 4121 0.68 0.674171
Target:  5'- cCCG-GCGGCUCcaGGu--CCaGGAGCGCa -3'
miRNA:   3'- -GGCuUGUCGAG--CCuuuGGcCCUCGUG- -5'
18979 5' -54.9 NC_004684.1 + 33806 0.68 0.674171
Target:  5'- aUCGAGCGGUUCGGcg-UCGGcGGGCGg -3'
miRNA:   3'- -GGCUUGUCGAGCCuuuGGCC-CUCGUg -5'
18979 5' -54.9 NC_004684.1 + 1984 0.68 0.674171
Target:  5'- aUGGACAGCUCGaacuGCUGGccuGGGCGCu -3'
miRNA:   3'- gGCUUGUCGAGCcuu-UGGCC---CUCGUG- -5'
18979 5' -54.9 NC_004684.1 + 13457 0.68 0.6849
Target:  5'- aCgGAGCAGCagcUGGAGGCCGaGGAcgGCAa -3'
miRNA:   3'- -GgCUUGUCGa--GCCUUUGGC-CCU--CGUg -5'
18979 5' -54.9 NC_004684.1 + 43706 0.68 0.6849
Target:  5'- cCUGGGCAGCUUGGAugcgcugguauGCCuGGAcauaGCGCa -3'
miRNA:   3'- -GGCUUGUCGAGCCUu----------UGGcCCU----CGUG- -5'
18979 5' -54.9 NC_004684.1 + 20607 0.7 0.587783
Target:  5'- gCCGAGCGuCUaccUGGgcACCGGcGAGCGCc -3'
miRNA:   3'- -GGCUUGUcGA---GCCuuUGGCC-CUCGUG- -5'
18979 5' -54.9 NC_004684.1 + 28802 0.71 0.493406
Target:  5'- uCCGAGCugguGCUcgaCGGuguGACCGGGcGGUACa -3'
miRNA:   3'- -GGCUUGu---CGA---GCCu--UUGGCCC-UCGUG- -5'
18979 5' -54.9 NC_004684.1 + 36892 0.72 0.473331
Target:  5'- gUCGGcaacCAGCUCGGAcuGGCCGGuGGCAUc -3'
miRNA:   3'- -GGCUu---GUCGAGCCU--UUGGCCcUCGUG- -5'
18979 5' -54.9 NC_004684.1 + 59694 0.8 0.152667
Target:  5'- gCCGAGCuGCgCGGGGugCGGGuGCGCa -3'
miRNA:   3'- -GGCUUGuCGaGCCUUugGCCCuCGUG- -5'
18979 5' -54.9 NC_004684.1 + 10005 0.78 0.209517
Target:  5'- gCCgGAACuGC-CGGAccugccgcgcgccGACCGGGAGCGCa -3'
miRNA:   3'- -GG-CUUGuCGaGCCU-------------UUGGCCCUCGUG- -5'
18979 5' -54.9 NC_004684.1 + 48946 0.75 0.322155
Target:  5'- gCCGAACGGCacgucggCGGGcgggguGGCCGGGgcgGGCGCg -3'
miRNA:   3'- -GGCUUGUCGa------GCCU------UUGGCCC---UCGUG- -5'
18979 5' -54.9 NC_004684.1 + 60472 0.74 0.337942
Target:  5'- gCCGGGCAGUuccUCGGGcaacACCGGGuGCAg -3'
miRNA:   3'- -GGCUUGUCG---AGCCUu---UGGCCCuCGUg -5'
18979 5' -54.9 NC_004684.1 + 64526 0.74 0.337942
Target:  5'- aCCGAugacgcccaGCGGCUCGGcggccuugguGACCGGGuugguGCGCa -3'
miRNA:   3'- -GGCU---------UGUCGAGCCu---------UUGGCCCu----CGUG- -5'
18979 5' -54.9 NC_004684.1 + 23753 0.74 0.346045
Target:  5'- cUCGGugcGCAGUUCGG--GCCGuGGGGCGCg -3'
miRNA:   3'- -GGCU---UGUCGAGCCuuUGGC-CCUCGUG- -5'
18979 5' -54.9 NC_004684.1 + 48356 0.73 0.42505
Target:  5'- aCGGGCGGuCUCGGAGugcuuGCCGGuGugguGCACg -3'
miRNA:   3'- gGCUUGUC-GAGCCUU-----UGGCC-Cu---CGUG- -5'
18979 5' -54.9 NC_004684.1 + 25654 0.72 0.434473
Target:  5'- -aGAGCGGCggCGGu-ACCGGGcagGGCGCg -3'
miRNA:   3'- ggCUUGUCGa-GCCuuUGGCCC---UCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.