miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18979 5' -54.9 NC_004684.1 + 333 0.71 0.483318
Target:  5'- gCGAuCAGCUCGGuguuaccgcGCCGGGGGUu- -3'
miRNA:   3'- gGCUuGUCGAGCCuu-------UGGCCCUCGug -5'
18979 5' -54.9 NC_004684.1 + 1984 0.68 0.674171
Target:  5'- aUGGACAGCUCGaacuGCUGGccuGGGCGCu -3'
miRNA:   3'- gGCUUGUCGAGCcuu-UGGCC---CUCGUG- -5'
18979 5' -54.9 NC_004684.1 + 2702 0.68 0.6849
Target:  5'- cCCGGccuGGC-CGGu-GCCGGGGGCAa -3'
miRNA:   3'- -GGCUug-UCGaGCCuuUGGCCCUCGUg -5'
18979 5' -54.9 NC_004684.1 + 3031 0.67 0.736566
Target:  5'- gCCGAugGccucgguGCUCGGc-ACCGGaGGCACc -3'
miRNA:   3'- -GGCUugU-------CGAGCCuuUGGCCcUCGUG- -5'
18979 5' -54.9 NC_004684.1 + 3183 1.12 0.000907
Target:  5'- cCCGAACAGCUCGGAAACCGGGAGCACg -3'
miRNA:   3'- -GGCUUGUCGAGCCUUUGGCCCUCGUG- -5'
18979 5' -54.9 NC_004684.1 + 4121 0.68 0.674171
Target:  5'- cCCG-GCGGCUCcaGGu--CCaGGAGCGCa -3'
miRNA:   3'- -GGCuUGUCGAG--CCuuuGGcCCUCGUG- -5'
18979 5' -54.9 NC_004684.1 + 7410 0.72 0.434473
Target:  5'- aCCGAGCAcGCgUCGGccauGGCCGGGuuCGCg -3'
miRNA:   3'- -GGCUUGU-CG-AGCCu---UUGGCCCucGUG- -5'
18979 5' -54.9 NC_004684.1 + 7866 0.67 0.768074
Target:  5'- gCCGucccaAG-UCGG-AACCGGuGAGCACa -3'
miRNA:   3'- -GGCuug--UCgAGCCuUUGGCC-CUCGUG- -5'
18979 5' -54.9 NC_004684.1 + 8135 0.68 0.698773
Target:  5'- aCCGcgucGguGCUCGGGugcagcaGaucgucaaccagaucGCCGGGGGCGCg -3'
miRNA:   3'- -GGCu---UguCGAGCCU-------U---------------UGGCCCUCGUG- -5'
18979 5' -54.9 NC_004684.1 + 9351 0.67 0.758036
Target:  5'- aUCGGcCAGCUCGGGGAU---GAGCACc -3'
miRNA:   3'- -GGCUuGUCGAGCCUUUGgccCUCGUG- -5'
18979 5' -54.9 NC_004684.1 + 9595 0.67 0.747875
Target:  5'- gCUGGcGCAGCUCguacgGGAguGACCGGGuacggcuGCGCu -3'
miRNA:   3'- -GGCU-UGUCGAG-----CCU--UUGGCCCu------CGUG- -5'
18979 5' -54.9 NC_004684.1 + 9959 0.66 0.777976
Target:  5'- cCUGcGCGGCgUCGGGAuCCGGcGGCAg -3'
miRNA:   3'- -GGCuUGUCG-AGCCUUuGGCCcUCGUg -5'
18979 5' -54.9 NC_004684.1 + 10005 0.78 0.209517
Target:  5'- gCCgGAACuGC-CGGAccugccgcgcgccGACCGGGAGCGCa -3'
miRNA:   3'- -GG-CUUGuCGaGCCU-------------UUGGCCCUCGUG- -5'
18979 5' -54.9 NC_004684.1 + 10667 0.67 0.716751
Target:  5'- gCCGAAcCAGC-CGGAucGGCgGGGAaCGCc -3'
miRNA:   3'- -GGCUU-GUCGaGCCU--UUGgCCCUcGUG- -5'
18979 5' -54.9 NC_004684.1 + 10804 0.66 0.787732
Target:  5'- aCCGuAGCGGCaucCGGcgGCUGGGccGCACc -3'
miRNA:   3'- -GGC-UUGUCGa--GCCuuUGGCCCu-CGUG- -5'
18979 5' -54.9 NC_004684.1 + 11565 0.69 0.598547
Target:  5'- cCCGAACAcccggccgucCUCGGuGACCGuGGuGCGCg -3'
miRNA:   3'- -GGCUUGUc---------GAGCCuUUGGC-CCuCGUG- -5'
18979 5' -54.9 NC_004684.1 + 13045 0.69 0.641794
Target:  5'- gCCGcguCGGCg-GGAGcACCGGGGGUGCc -3'
miRNA:   3'- -GGCuu-GUCGagCCUU-UGGCCCUCGUG- -5'
18979 5' -54.9 NC_004684.1 + 13121 0.66 0.816019
Target:  5'- gCCGAcCGGCcCGGcgacguAACCGGGcGCGu -3'
miRNA:   3'- -GGCUuGUCGaGCCu-----UUGGCCCuCGUg -5'
18979 5' -54.9 NC_004684.1 + 13190 0.68 0.706201
Target:  5'- gCCGGugggGCGGCgugcaccgCGcGAACCGGG-GCGCa -3'
miRNA:   3'- -GGCU----UGUCGa-------GCcUUUGGCCCuCGUG- -5'
18979 5' -54.9 NC_004684.1 + 13457 0.68 0.6849
Target:  5'- aCgGAGCAGCagcUGGAGGCCGaGGAcgGCAa -3'
miRNA:   3'- -GgCUUGUCGa--GCCUUUGGC-CCU--CGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.