miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18979 5' -54.9 NC_004684.1 + 67468 0.7 0.56637
Target:  5'- gUCGuGgAGC-CGGAcACCGGGGGCGg -3'
miRNA:   3'- -GGCuUgUCGaGCCUuUGGCCCUCGUg -5'
18979 5' -54.9 NC_004684.1 + 65734 0.71 0.513861
Target:  5'- aCCGggUAGgUCGG-GACCGGagcuGCGCg -3'
miRNA:   3'- -GGCuuGUCgAGCCuUUGGCCcu--CGUG- -5'
18979 5' -54.9 NC_004684.1 + 64526 0.74 0.337942
Target:  5'- aCCGAugacgcccaGCGGCUCGGcggccuugguGACCGGGuugguGCGCa -3'
miRNA:   3'- -GGCU---------UGUCGAGCCu---------UUGGCCCu----CGUG- -5'
18979 5' -54.9 NC_004684.1 + 63461 0.68 0.706201
Target:  5'- gCCGccCAGUUcCGGcauUCGGGGGCGCg -3'
miRNA:   3'- -GGCuuGUCGA-GCCuuuGGCCCUCGUG- -5'
18979 5' -54.9 NC_004684.1 + 63200 0.67 0.758036
Target:  5'- gCCGAACGGCcccaucuucUCGGccACCGGcGGCuCg -3'
miRNA:   3'- -GGCUUGUCG---------AGCCuuUGGCCcUCGuG- -5'
18979 5' -54.9 NC_004684.1 + 60472 0.74 0.337942
Target:  5'- gCCGGGCAGUuccUCGGGcaacACCGGGuGCAg -3'
miRNA:   3'- -GGCUUGUCG---AGCCUu---UGGCCCuCGUg -5'
18979 5' -54.9 NC_004684.1 + 59774 0.69 0.609339
Target:  5'- cCCGcGCAGCUCGGcgcaGGAaaGGGucaauGCGCg -3'
miRNA:   3'- -GGCuUGUCGAGCC----UUUggCCCu----CGUG- -5'
18979 5' -54.9 NC_004684.1 + 59695 0.66 0.816019
Target:  5'- gUCGAGCAuugguGCgCGGGauguGACCGGGuGGUGCg -3'
miRNA:   3'- -GGCUUGU-----CGaGCCU----UUGGCCC-UCGUG- -5'
18979 5' -54.9 NC_004684.1 + 59694 0.8 0.152667
Target:  5'- gCCGAGCuGCgCGGGGugCGGGuGCGCa -3'
miRNA:   3'- -GGCUUGuCGaGCCUUugGCCCuCGUG- -5'
18979 5' -54.9 NC_004684.1 + 59068 0.71 0.528384
Target:  5'- gCCGAacgguaaccagcgcgGCAGCUCGGcGGACaGGGcccGGCGCa -3'
miRNA:   3'- -GGCU---------------UGUCGAGCC-UUUGgCCC---UCGUG- -5'
18979 5' -54.9 NC_004684.1 + 58082 0.85 0.072124
Target:  5'- aCCGuGCAGCUCG---ACCGGGAGCGCg -3'
miRNA:   3'- -GGCuUGUCGAGCcuuUGGCCCUCGUG- -5'
18979 5' -54.9 NC_004684.1 + 57271 0.68 0.706201
Target:  5'- cCCGcACAGCUCGGccugugaCGGcGAGcCGCa -3'
miRNA:   3'- -GGCuUGUCGAGCCuuug---GCC-CUC-GUG- -5'
18979 5' -54.9 NC_004684.1 + 57170 0.66 0.805828
Target:  5'- gCCGAcgcGCAcGCUCGGGcgcAGgCGGGccuggaaggcggcGGCGCg -3'
miRNA:   3'- -GGCU---UGU-CGAGCCU---UUgGCCC-------------UCGUG- -5'
18979 5' -54.9 NC_004684.1 + 55785 0.69 0.609339
Target:  5'- uUCGAugGCGGCgugacCGGGugguCCGGuGAGCGCg -3'
miRNA:   3'- -GGCU--UGUCGa----GCCUuu--GGCC-CUCGUG- -5'
18979 5' -54.9 NC_004684.1 + 54330 0.69 0.649365
Target:  5'- uCCGAgggcauagcacagcGCGGCggUGGAGauguuggcaaguGCCGGGGGCGg -3'
miRNA:   3'- -GGCU--------------UGUCGa-GCCUU------------UGGCCCUCGUg -5'
18979 5' -54.9 NC_004684.1 + 53363 0.69 0.598547
Target:  5'- cCCGGugGGU--GGGAGCCGaugacaccGGAGCGCg -3'
miRNA:   3'- -GGCUugUCGagCCUUUGGC--------CCUCGUG- -5'
18979 5' -54.9 NC_004684.1 + 52750 0.66 0.777976
Target:  5'- -aGAGguGCU-GGccACCuGGGAGCGCa -3'
miRNA:   3'- ggCUUguCGAgCCuuUGG-CCCUCGUG- -5'
18979 5' -54.9 NC_004684.1 + 50928 0.67 0.727221
Target:  5'- gCCGGACAGCcCGGccucguCCaGGcGCACg -3'
miRNA:   3'- -GGCUUGUCGaGCCuuu---GGcCCuCGUG- -5'
18979 5' -54.9 NC_004684.1 + 49705 0.66 0.816019
Target:  5'- aCCGGGCAcgcGCUCGGcgGCgCGGcGuucaaacucagcGGCACg -3'
miRNA:   3'- -GGCUUGU---CGAGCCuuUG-GCC-C------------UCGUG- -5'
18979 5' -54.9 NC_004684.1 + 48946 0.75 0.322155
Target:  5'- gCCGAACGGCacgucggCGGGcgggguGGCCGGGgcgGGCGCg -3'
miRNA:   3'- -GGCUUGUCGa------GCCU------UUGGCCC---UCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.