miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18979 5' -54.9 NC_004684.1 + 3183 1.12 0.000907
Target:  5'- cCCGAACAGCUCGGAAACCGGGAGCACg -3'
miRNA:   3'- -GGCUUGUCGAGCCUUUGGCCCUCGUG- -5'
18979 5' -54.9 NC_004684.1 + 36864 0.69 0.630972
Target:  5'- gCCGAcCAGCgUCGGc-ACCGGGcGCGg -3'
miRNA:   3'- -GGCUuGUCG-AGCCuuUGGCCCuCGUg -5'
18979 5' -54.9 NC_004684.1 + 36719 0.69 0.641794
Target:  5'- aCGAaccGCAGCUCcacgcgugccuGGAAcgucucACCGGGGGcCACc -3'
miRNA:   3'- gGCU---UGUCGAG-----------CCUU------UGGCCCUC-GUG- -5'
18979 5' -54.9 NC_004684.1 + 13121 0.66 0.816019
Target:  5'- gCCGAcCGGCcCGGcgacguAACCGGGcGCGu -3'
miRNA:   3'- -GGCUuGUCGaGCCu-----UUGGCCCuCGUg -5'
18979 5' -54.9 NC_004684.1 + 23997 0.74 0.354285
Target:  5'- gCGAGCuguuGCUCGGucGAGCCGGG-GCGg -3'
miRNA:   3'- gGCUUGu---CGAGCC--UUUGGCCCuCGUg -5'
18979 5' -54.9 NC_004684.1 + 7410 0.72 0.434473
Target:  5'- aCCGAGCAcGCgUCGGccauGGCCGGGuuCGCg -3'
miRNA:   3'- -GGCUUGU-CG-AGCCu---UUGGCCCucGUG- -5'
18979 5' -54.9 NC_004684.1 + 14765 0.72 0.473331
Target:  5'- aCC-AGCGGUgcgUCGaacuGAACCGGGAGCGCa -3'
miRNA:   3'- -GGcUUGUCG---AGCc---UUUGGCCCUCGUG- -5'
18979 5' -54.9 NC_004684.1 + 333 0.71 0.483318
Target:  5'- gCGAuCAGCUCGGuguuaccgcGCCGGGGGUu- -3'
miRNA:   3'- gGCUuGUCGAGCCuu-------UGGCCCUCGug -5'
18979 5' -54.9 NC_004684.1 + 65734 0.71 0.513861
Target:  5'- aCCGggUAGgUCGG-GACCGGagcuGCGCg -3'
miRNA:   3'- -GGCuuGUCgAGCCuUUGGCCcu--CGUG- -5'
18979 5' -54.9 NC_004684.1 + 59774 0.69 0.609339
Target:  5'- cCCGcGCAGCUCGGcgcaGGAaaGGGucaauGCGCg -3'
miRNA:   3'- -GGCuUGUCGAGCC----UUUggCCCu----CGUG- -5'
18979 5' -54.9 NC_004684.1 + 67468 0.7 0.56637
Target:  5'- gUCGuGgAGC-CGGAcACCGGGGGCGg -3'
miRNA:   3'- -GGCuUgUCGaGCCUuUGGCCCUCGUg -5'
18979 5' -54.9 NC_004684.1 + 15810 0.71 0.503588
Target:  5'- cCCuuGCuGgUCGGugucuCCGGGAGCACg -3'
miRNA:   3'- -GGcuUGuCgAGCCuuu--GGCCCUCGUG- -5'
18979 5' -54.9 NC_004684.1 + 28885 0.79 0.184168
Target:  5'- gUCGAGCaccAGCUCGG-AACCGGGuGGCAUg -3'
miRNA:   3'- -GGCUUG---UCGAGCCuUUGGCCC-UCGUG- -5'
18979 5' -54.9 NC_004684.1 + 53363 0.69 0.598547
Target:  5'- cCCGGugGGU--GGGAGCCGaugacaccGGAGCGCg -3'
miRNA:   3'- -GGCUugUCGagCCUUUGGC--------CCUCGUG- -5'
18979 5' -54.9 NC_004684.1 + 22577 0.74 0.337942
Target:  5'- aCCGAGCGGUUggccgcugccaGGGAACCGgccuGGAGCGCg -3'
miRNA:   3'- -GGCUUGUCGAg----------CCUUUGGC----CCUCGUG- -5'
18979 5' -54.9 NC_004684.1 + 16495 0.71 0.499504
Target:  5'- aCCGAACAGCaccgucugggugCGGAuguagucgauguGCCGGGuGUACu -3'
miRNA:   3'- -GGCUUGUCGa-----------GCCUu-----------UGGCCCuCGUG- -5'
18979 5' -54.9 NC_004684.1 + 11565 0.69 0.598547
Target:  5'- cCCGAACAcccggccgucCUCGGuGACCGuGGuGCGCg -3'
miRNA:   3'- -GGCUUGUc---------GAGCCuUUGGC-CCuCGUG- -5'
18979 5' -54.9 NC_004684.1 + 13045 0.69 0.641794
Target:  5'- gCCGcguCGGCg-GGAGcACCGGGGGUGCc -3'
miRNA:   3'- -GGCuu-GUCGagCCUU-UGGCCCUCGUG- -5'
18979 5' -54.9 NC_004684.1 + 34264 0.74 0.354285
Target:  5'- uUGAGCgugAGCUCGGGcguGCCGGuGAGCAg -3'
miRNA:   3'- gGCUUG---UCGAGCCUu--UGGCC-CUCGUg -5'
18979 5' -54.9 NC_004684.1 + 18446 0.72 0.462467
Target:  5'- gUCGAGCGGCaccgcgccgccggUCGGcu-CCGGGGGCGg -3'
miRNA:   3'- -GGCUUGUCG-------------AGCCuuuGGCCCUCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.