Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18980 | 3' | -55.9 | NC_004684.1 | + | 30817 | 0.7 | 0.451906 |
Target: 5'- cGGAcgGCgaUGCgaUGC-CCGCCAGc -3' miRNA: 3'- uCCUuaCGgaACGgaACGuGGCGGUC- -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 22387 | 0.7 | 0.442115 |
Target: 5'- cGGggUucggcaccgccGCCgcgcggGCCUUGgcCGCCGCCAGg -3' miRNA: 3'- uCCuuA-----------CGGaa----CGGAAC--GUGGCGGUC- -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 12077 | 0.67 | 0.649502 |
Target: 5'- cGGGGucAUGCCgucggUGCCgccggucgcggugUGCGCCgcagguGCCAGg -3' miRNA: 3'- -UCCU--UACGGa----ACGGa------------ACGUGG------CGGUC- -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 18463 | 0.66 | 0.719001 |
Target: 5'- uGGAAcuUGCCggugaUGUCgagcggcaccGCGCCGCCGGu -3' miRNA: 3'- uCCUU--ACGGa----ACGGaa--------CGUGGCGGUC- -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 38558 | 0.66 | 0.664857 |
Target: 5'- cGGugccUGCCUUGUCggcgugaucGCGCCGUCGGc -3' miRNA: 3'- uCCuu--ACGGAACGGaa-------CGUGGCGGUC- -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 18140 | 0.66 | 0.686682 |
Target: 5'- cGGGcAGUcGuCCUcGCCUU-CGCCGCCGGu -3' miRNA: 3'- -UCC-UUA-C-GGAaCGGAAcGUGGCGGUC- -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 13662 | 0.66 | 0.719001 |
Target: 5'- uGGaGAAUGCCc-GCCUcgacGCaguagccgaugGCCGCCAGg -3' miRNA: 3'- -UC-CUUACGGaaCGGAa---CG-----------UGGCGGUC- -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 26075 | 0.66 | 0.67579 |
Target: 5'- cAGGAGcGCCagcgggUUGCCUUcgcGCACCagcuugGCCAGc -3' miRNA: 3'- -UCCUUaCGG------AACGGAA---CGUGG------CGGUC- -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 31266 | 0.66 | 0.686682 |
Target: 5'- gAGGccuUGCCcgaucugGCCcaGCACCGCCGc -3' miRNA: 3'- -UCCuu-ACGGaa-----CGGaaCGUGGCGGUc -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 40226 | 0.66 | 0.697522 |
Target: 5'- cAGGAucGCCgagGUCggUGCcgagGCCGCCAGc -3' miRNA: 3'- -UCCUuaCGGaa-CGGa-ACG----UGGCGGUC- -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 55760 | 0.66 | 0.719001 |
Target: 5'- uAGGuccaGCa--GCUggUGCGCCGCCAGg -3' miRNA: 3'- -UCCuua-CGgaaCGGa-ACGUGGCGGUC- -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 15878 | 0.66 | 0.719001 |
Target: 5'- uGGuGUGCacgUUGCCggUGuCGCCGCCGc -3' miRNA: 3'- uCCuUACGg--AACGGa-AC-GUGGCGGUc -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 22923 | 0.72 | 0.351328 |
Target: 5'- uGGccaGCCcgGCC-UGCACCGCCGGg -3' miRNA: 3'- uCCuuaCGGaaCGGaACGUGGCGGUC- -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 9579 | 0.72 | 0.343008 |
Target: 5'- cGGGAGUGaCCggguacggcUGCgCUUGC-CCGCCAGc -3' miRNA: 3'- -UCCUUAC-GGa--------ACG-GAACGuGGCGGUC- -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 3632 | 0.97 | 0.006975 |
Target: 5'- cAGGAAUGCCUUGCCUUGCACCG-CAGg -3' miRNA: 3'- -UCCUUACGGAACGGAACGUGGCgGUC- -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 2806 | 0.66 | 0.686682 |
Target: 5'- cGGuguggcGCaCUUGCCcccgGCACCGgCCAGg -3' miRNA: 3'- uCCuua---CG-GAACGGaa--CGUGGC-GGUC- -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 25753 | 0.67 | 0.64291 |
Target: 5'- uAGGucgcGCCcUGCCcgGUACCGCCGc -3' miRNA: 3'- -UCCuua-CGGaACGGaaCGUGGCGGUc -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 45074 | 0.66 | 0.719001 |
Target: 5'- -----cGCUcgGCUucuggUUGCGCCGCCAGg -3' miRNA: 3'- uccuuaCGGaaCGG-----AACGUGGCGGUC- -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 58935 | 0.67 | 0.598975 |
Target: 5'- cGGGGAcaacaGCCagGCCUUGCGCCggGCCc- -3' miRNA: 3'- -UCCUUa----CGGaaCGGAACGUGG--CGGuc -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 2918 | 0.66 | 0.719001 |
Target: 5'- uGGAaguauuucgagGUGCCUccggUGCCgaGCACCgagGCCAu -3' miRNA: 3'- uCCU-----------UACGGA----ACGGaaCGUGG---CGGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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