miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18980 5' -59.4 NC_004684.1 + 3599 1.09 0.000658
Target:  5'- cACCCGUCGGCGAUUGCGGCGUCCUGGc -3'
miRNA:   3'- -UGGGCAGCCGCUAACGCCGCAGGACC- -5'
18980 5' -59.4 NC_004684.1 + 747 0.67 0.548862
Target:  5'- cACgCUGUCGuGCGcgU-CGGUGUCCUuGGg -3'
miRNA:   3'- -UG-GGCAGC-CGCuaAcGCCGCAGGA-CC- -5'
18980 5' -59.4 NC_004684.1 + 10107 0.66 0.569364
Target:  5'- uCCCgGUCGGCGc--GCGGCagGUCC-GGc -3'
miRNA:   3'- uGGG-CAGCCGCuaaCGCCG--CAGGaCC- -5'
18980 5' -59.4 NC_004684.1 + 39063 0.66 0.579687
Target:  5'- gACCCG-CGcGCGAacaccucggUGCGGUG-CUUGGu -3'
miRNA:   3'- -UGGGCaGC-CGCUa--------ACGCCGCaGGACC- -5'
18980 5' -59.4 NC_004684.1 + 21552 0.73 0.249044
Target:  5'- cACCuCGUCGGUGGUcGgGGUGUCCUc- -3'
miRNA:   3'- -UGG-GCAGCCGCUAaCgCCGCAGGAcc -5'
18980 5' -59.4 NC_004684.1 + 9978 0.72 0.273153
Target:  5'- cACUCGUCGGCGGccugcuccugcGCGGCGUCg-GGa -3'
miRNA:   3'- -UGGGCAGCCGCUaa---------CGCCGCAGgaCC- -5'
18980 5' -59.4 NC_004684.1 + 37433 0.72 0.281145
Target:  5'- cGCUCGcCGGuCGGUUGCGGCGggcuuUCCaGGu -3'
miRNA:   3'- -UGGGCaGCC-GCUAACGCCGC-----AGGaCC- -5'
18980 5' -59.4 NC_004684.1 + 33849 0.7 0.379648
Target:  5'- uCCCGUUGuaGCuGAggucgGgGGCGUCCUGGc -3'
miRNA:   3'- uGGGCAGC--CG-CUaa---CgCCGCAGGACC- -5'
18980 5' -59.4 NC_004684.1 + 59954 0.68 0.441474
Target:  5'- uGCCCGgcaccgaccUGGCcgccgugGCGGCGUUCUGGu -3'
miRNA:   3'- -UGGGCa--------GCCGcuaa---CGCCGCAGGACC- -5'
18980 5' -59.4 NC_004684.1 + 39321 0.67 0.495797
Target:  5'- gACCCGUCGGCGcgcaagaucaGCGaGCGguaccccgaccccUUCUGGg -3'
miRNA:   3'- -UGGGCAGCCGCuaa-------CGC-CGC-------------AGGACC- -5'
18980 5' -59.4 NC_004684.1 + 24932 0.68 0.445178
Target:  5'- gGCCCGgUGGCGcUaccgcugccgcccugUGUGGUGUCCUGc -3'
miRNA:   3'- -UGGGCaGCCGCuA---------------ACGCCGCAGGACc -5'
18980 5' -59.4 NC_004684.1 + 60087 0.69 0.432293
Target:  5'- uGCgCCGUccaauacugCGGCGcgUGCGGCaagGUCCgGGu -3'
miRNA:   3'- -UG-GGCA---------GCCGCuaACGCCG---CAGGaCC- -5'
18980 5' -59.4 NC_004684.1 + 22173 0.74 0.214587
Target:  5'- -gUCGUUGGCGGcgcgUGCGGUGUCCcGGu -3'
miRNA:   3'- ugGGCAGCCGCUa---ACGCCGCAGGaCC- -5'
18980 5' -59.4 NC_004684.1 + 48898 0.68 0.460163
Target:  5'- gGCCUGUUGGaGAacgGCGGCcuGUCCUGc -3'
miRNA:   3'- -UGGGCAGCCgCUaa-CGCCG--CAGGACc -5'
18980 5' -59.4 NC_004684.1 + 34320 0.73 0.220032
Target:  5'- cGCCCGUUGGCccg-GCGGUGUCCc-- -3'
miRNA:   3'- -UGGGCAGCCGcuaaCGCCGCAGGacc -5'
18980 5' -59.4 NC_004684.1 + 62385 0.69 0.432293
Target:  5'- gGCCCGcgCGGCGcuggaGCaGCG-CCUGGa -3'
miRNA:   3'- -UGGGCa-GCCGCuaa--CGcCGCaGGACC- -5'
18980 5' -59.4 NC_004684.1 + 29350 0.68 0.488957
Target:  5'- -gCUGUCGGCGGUcgGCGGUGaugCCUugaauGGg -3'
miRNA:   3'- ugGGCAGCCGCUAa-CGCCGCa--GGA-----CC- -5'
18980 5' -59.4 NC_004684.1 + 12960 0.66 0.559087
Target:  5'- cCCCGgCGGCGGccucgGCGGUGgcggCCUcGGc -3'
miRNA:   3'- uGGGCaGCCGCUaa---CGCCGCa---GGA-CC- -5'
18980 5' -59.4 NC_004684.1 + 35434 0.73 0.249044
Target:  5'- cACCgCGUCcacuuGGCGAaUGCGGUGUgCUUGGg -3'
miRNA:   3'- -UGG-GCAG-----CCGCUaACGCCGCA-GGACC- -5'
18980 5' -59.4 NC_004684.1 + 41417 0.72 0.281145
Target:  5'- -gCCGUCGGCGGUcGCGGUG-CCg-- -3'
miRNA:   3'- ugGGCAGCCGCUAaCGCCGCaGGacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.