miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18981 3' -55.7 NC_004684.1 + 22396 0.66 0.787801
Target:  5'- gGGGAGCaUCGGgguuCGG-CaCCGCCGCCg -3'
miRNA:   3'- gCUCUCGaAGCU----GUCaG-GGUGGUGGg -5'
18981 3' -55.7 NC_004684.1 + 30476 0.66 0.787801
Target:  5'- cCGGGAuGCg-CGugGGgUCCACCACgCCg -3'
miRNA:   3'- -GCUCU-CGaaGCugUCaGGGUGGUG-GG- -5'
18981 3' -55.7 NC_004684.1 + 40881 0.66 0.787801
Target:  5'- ---cGGCgg-GACGGaCCCGCCACCUg -3'
miRNA:   3'- gcucUCGaagCUGUCaGGGUGGUGGG- -5'
18981 3' -55.7 NC_004684.1 + 61486 0.66 0.787801
Target:  5'- ---cGGCgg-GACGGaCCCGCCACCUg -3'
miRNA:   3'- gcucUCGaagCUGUCaGGGUGGUGGG- -5'
18981 3' -55.7 NC_004684.1 + 66454 0.66 0.778129
Target:  5'- -cAGGGUggCGGCGuuGUCuccacgCCGCCACCCg -3'
miRNA:   3'- gcUCUCGaaGCUGU--CAG------GGUGGUGGG- -5'
18981 3' -55.7 NC_004684.1 + 37488 0.66 0.778129
Target:  5'- gGAG-GCcUCGu--GUacgaCCCGCCACCCg -3'
miRNA:   3'- gCUCuCGaAGCuguCA----GGGUGGUGGG- -5'
18981 3' -55.7 NC_004684.1 + 64965 0.66 0.778129
Target:  5'- cCGGGGGCg-CGACcGgacaacgCgCACCACCCc -3'
miRNA:   3'- -GCUCUCGaaGCUGuCa------GgGUGGUGGG- -5'
18981 3' -55.7 NC_004684.1 + 46865 0.66 0.778129
Target:  5'- -cGGAcggUCGACGGUUCCugCGCCg -3'
miRNA:   3'- gcUCUcgaAGCUGUCAGGGugGUGGg -5'
18981 3' -55.7 NC_004684.1 + 52295 0.66 0.777154
Target:  5'- gGGGAGaUUCGcaagauugccgauACGGUCCUACUGgCCCg -3'
miRNA:   3'- gCUCUCgAAGC-------------UGUCAGGGUGGU-GGG- -5'
18981 3' -55.7 NC_004684.1 + 66284 0.66 0.768314
Target:  5'- gGAGAGCU--GACcauGGcCaCCACCACCa -3'
miRNA:   3'- gCUCUCGAagCUG---UCaG-GGUGGUGGg -5'
18981 3' -55.7 NC_004684.1 + 35863 0.66 0.768314
Target:  5'- aCGAugGAGCg-CGGCgcgcgcugGGUCugcaCCACCACCCa -3'
miRNA:   3'- -GCU--CUCGaaGCUG--------UCAG----GGUGGUGGG- -5'
18981 3' -55.7 NC_004684.1 + 30533 0.66 0.768314
Target:  5'- aCGAGGGg-UCGgucaGCAGcUCCaCGCCGCCg -3'
miRNA:   3'- -GCUCUCgaAGC----UGUC-AGG-GUGGUGGg -5'
18981 3' -55.7 NC_004684.1 + 13476 0.66 0.768314
Target:  5'- cCGAGgacGGCaaCGGCAacCCCACCGCCg -3'
miRNA:   3'- -GCUC---UCGaaGCUGUcaGGGUGGUGGg -5'
18981 3' -55.7 NC_004684.1 + 40374 0.66 0.752336
Target:  5'- uGGGGGCcUCGGCGGUggcggCCUucggcaggccggucaGCCACUCg -3'
miRNA:   3'- gCUCUCGaAGCUGUCA-----GGG---------------UGGUGGG- -5'
18981 3' -55.7 NC_004684.1 + 15652 0.66 0.748293
Target:  5'- gCGGGucAGCUucUCGAUGGUCgCCGguCCACCa -3'
miRNA:   3'- -GCUC--UCGA--AGCUGUCAG-GGU--GGUGGg -5'
18981 3' -55.7 NC_004684.1 + 59452 0.66 0.748293
Target:  5'- cCGGuGuGCgccggUCGGCGGcgaugUCCACCACCUg -3'
miRNA:   3'- -GCU-CuCGa----AGCUGUCa----GGGUGGUGGG- -5'
18981 3' -55.7 NC_004684.1 + 17241 0.66 0.748293
Target:  5'- uCGAcGGCgaCGACGGUgCCCaACCguuGCCCu -3'
miRNA:   3'- -GCUcUCGaaGCUGUCA-GGG-UGG---UGGG- -5'
18981 3' -55.7 NC_004684.1 + 17977 0.66 0.738109
Target:  5'- aGGGuGGCcUCGAU-GUUCCACCACUUg -3'
miRNA:   3'- gCUC-UCGaAGCUGuCAGGGUGGUGGG- -5'
18981 3' -55.7 NC_004684.1 + 38367 0.67 0.727824
Target:  5'- aCGAGGGCgcggUCacCAGUCCCaagaucGCUACCg -3'
miRNA:   3'- -GCUCUCGa---AGcuGUCAGGG------UGGUGGg -5'
18981 3' -55.7 NC_004684.1 + 30616 0.67 0.725756
Target:  5'- -cGGAGCcgUCGGCGGUgaacuucaccgacCCCagcgccaGCCGCCCc -3'
miRNA:   3'- gcUCUCGa-AGCUGUCA-------------GGG-------UGGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.