miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18981 5' -60.9 NC_004684.1 + 4131 1.05 0.000632
Target:  5'- gAUGGCCGGUAGGCCACCGUCGCCAUGc -3'
miRNA:   3'- -UACCGGCCAUCCGGUGGCAGCGGUAC- -5'
18981 5' -60.9 NC_004684.1 + 33298 0.78 0.070022
Target:  5'- -gGGCCGccGGGCUGuCCGUCGCCAUGg -3'
miRNA:   3'- uaCCGGCcaUCCGGU-GGCAGCGGUAC- -5'
18981 5' -60.9 NC_004684.1 + 46055 0.76 0.100115
Target:  5'- cUGGCCGaGgucauggAGGCCGCCGUCGaguaCGUGg -3'
miRNA:   3'- uACCGGC-Ca------UCCGGUGGCAGCg---GUAC- -5'
18981 5' -60.9 NC_004684.1 + 9803 0.74 0.136186
Target:  5'- cUGcGCCGGUggcacccgacgcucaAGGCCACCGUCuuGCCGUc -3'
miRNA:   3'- uAC-CGGCCA---------------UCCGGUGGCAG--CGGUAc -5'
18981 5' -60.9 NC_004684.1 + 59861 0.74 0.138384
Target:  5'- cUGGCCGGUcgAGaGCCAgC-UCGCCGUGg -3'
miRNA:   3'- uACCGGCCA--UC-CGGUgGcAGCGGUAC- -5'
18981 5' -60.9 NC_004684.1 + 63062 0.73 0.149866
Target:  5'- -cGGuuGGUGgcGGCUACCGUgcCGCCGUGc -3'
miRNA:   3'- uaCCggCCAU--CCGGUGGCA--GCGGUAC- -5'
18981 5' -60.9 NC_004684.1 + 39339 0.73 0.153882
Target:  5'- -aGGCCGGUuGGCCGCCcacUCGUCAa- -3'
miRNA:   3'- uaCCGGCCAuCCGGUGGc--AGCGGUac -5'
18981 5' -60.9 NC_004684.1 + 65400 0.73 0.162208
Target:  5'- cUGGCCGuGgugcacagcgAGGCCGCCGUCGCg--- -3'
miRNA:   3'- uACCGGC-Ca---------UCCGGUGGCAGCGguac -5'
18981 5' -60.9 NC_004684.1 + 1326 0.73 0.162208
Target:  5'- -gGGCCGGgcgaccgaccAGGCCGCCGagGCCGa- -3'
miRNA:   3'- uaCCGGCCa---------UCCGGUGGCagCGGUac -5'
18981 5' -60.9 NC_004684.1 + 26319 0.73 0.162208
Target:  5'- -aGGCCGccGGGCCGCCGaUUGCCGa- -3'
miRNA:   3'- uaCCGGCcaUCCGGUGGC-AGCGGUac -5'
18981 5' -60.9 NC_004684.1 + 60174 0.73 0.162208
Target:  5'- gGUGGcCCGGUgaaggcccgcacGGGCCGCCGggccgcgCGCCAc- -3'
miRNA:   3'- -UACC-GGCCA------------UCCGGUGGCa------GCGGUac -5'
18981 5' -60.9 NC_004684.1 + 58439 0.73 0.166521
Target:  5'- -cGGCgCGGcaacgccagcaGGGCCACCGggcgCGCCAUGa -3'
miRNA:   3'- uaCCG-GCCa----------UCCGGUGGCa---GCGGUAC- -5'
18981 5' -60.9 NC_004684.1 + 15181 0.73 0.170937
Target:  5'- -cGGCCuccaGGgcGGCCACCG-CGCCGa- -3'
miRNA:   3'- uaCCGG----CCauCCGGUGGCaGCGGUac -5'
18981 5' -60.9 NC_004684.1 + 23008 0.72 0.180084
Target:  5'- -gGGCCGacuGGCCGCCGUCGgCAg- -3'
miRNA:   3'- uaCCGGCcauCCGGUGGCAGCgGUac -5'
18981 5' -60.9 NC_004684.1 + 14072 0.72 0.189662
Target:  5'- gGUGGCCGGgcuGGCCugCGcCGCgCGa- -3'
miRNA:   3'- -UACCGGCCau-CCGGugGCaGCG-GUac -5'
18981 5' -60.9 NC_004684.1 + 49286 0.72 0.194617
Target:  5'- cUGGCCGaccgagcAGGCCGCCGcCGCCGc- -3'
miRNA:   3'- uACCGGCca-----UCCGGUGGCaGCGGUac -5'
18981 5' -60.9 NC_004684.1 + 7493 0.72 0.198662
Target:  5'- cUGGCUGGUugucuacgcgcuGGCCGCCG-CGCgCGUGa -3'
miRNA:   3'- uACCGGCCAu-----------CCGGUGGCaGCG-GUAC- -5'
18981 5' -60.9 NC_004684.1 + 2980 0.71 0.204867
Target:  5'- gGUGGCCaacgGGUugAGGCCaucACCG-CGCCGUGc -3'
miRNA:   3'- -UACCGG----CCA--UCCGG---UGGCaGCGGUAC- -5'
18981 5' -60.9 NC_004684.1 + 1993 0.71 0.221117
Target:  5'- uUGGCUGaGUuuGGCCACCGUCuCCAg- -3'
miRNA:   3'- uACCGGC-CAu-CCGGUGGCAGcGGUac -5'
18981 5' -60.9 NC_004684.1 + 66736 0.71 0.232551
Target:  5'- -gGGCCGccgccgAGGCCAUCGUgGCCAc- -3'
miRNA:   3'- uaCCGGCca----UCCGGUGGCAgCGGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.