miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18981 5' -60.9 NC_004684.1 + 1326 0.73 0.162208
Target:  5'- -gGGCCGGgcgaccgaccAGGCCGCCGagGCCGa- -3'
miRNA:   3'- uaCCGGCCa---------UCCGGUGGCagCGGUac -5'
18981 5' -60.9 NC_004684.1 + 1993 0.71 0.221117
Target:  5'- uUGGCUGaGUuuGGCCACCGUCuCCAg- -3'
miRNA:   3'- uACCGGC-CAu-CCGGUGGCAGcGGUac -5'
18981 5' -60.9 NC_004684.1 + 2366 0.69 0.281949
Target:  5'- cGUGGCCGccaucgacauGGCCACCuUCGCCGg- -3'
miRNA:   3'- -UACCGGCcau-------CCGGUGGcAGCGGUac -5'
18981 5' -60.9 NC_004684.1 + 2980 0.71 0.204867
Target:  5'- gGUGGCCaacgGGUugAGGCCaucACCG-CGCCGUGc -3'
miRNA:   3'- -UACCGG----CCA--UCCGG---UGGCaGCGGUAC- -5'
18981 5' -60.9 NC_004684.1 + 3498 0.66 0.446768
Target:  5'- cGUGGCCGccAGGaCGCCGcaaUCGCCGa- -3'
miRNA:   3'- -UACCGGCcaUCCgGUGGC---AGCGGUac -5'
18981 5' -60.9 NC_004684.1 + 4038 0.66 0.475494
Target:  5'- cAUGGCgaCGGU-GGCCuACCGgccaUCGCCGg- -3'
miRNA:   3'- -UACCG--GCCAuCCGG-UGGC----AGCGGUac -5'
18981 5' -60.9 NC_004684.1 + 4131 1.05 0.000632
Target:  5'- gAUGGCCGGUAGGCCACCGUCGCCAUGc -3'
miRNA:   3'- -UACCGGCCAUCCGGUGGCAGCGGUAC- -5'
18981 5' -60.9 NC_004684.1 + 4983 0.69 0.282633
Target:  5'- -aGGCCGGUggcgaccAGGCCGCCugaGCCGc- -3'
miRNA:   3'- uaCCGGCCA-------UCCGGUGGcagCGGUac -5'
18981 5' -60.9 NC_004684.1 + 5131 0.7 0.237857
Target:  5'- -aGcGCCgGGUGccagacgcgugguGGCCACCGUUGCCAUc -3'
miRNA:   3'- uaC-CGG-CCAU-------------CCGGUGGCAGCGGUAc -5'
18981 5' -60.9 NC_004684.1 + 6024 0.67 0.383732
Target:  5'- gGUGGCCuuUAGGCCGCCaG-CGCCu-- -3'
miRNA:   3'- -UACCGGccAUCCGGUGG-CaGCGGuac -5'
18981 5' -60.9 NC_004684.1 + 6682 0.69 0.31183
Target:  5'- aGUGGCCugcacaGGUcgaccuGGCCACCGUCGgCGc- -3'
miRNA:   3'- -UACCGG------CCAu-----CCGGUGGCAGCgGUac -5'
18981 5' -60.9 NC_004684.1 + 7493 0.72 0.198662
Target:  5'- cUGGCUGGUugucuacgcgcuGGCCGCCG-CGCgCGUGa -3'
miRNA:   3'- uACCGGCCAu-----------CCGGUGGCaGCG-GUAC- -5'
18981 5' -60.9 NC_004684.1 + 7679 0.67 0.392371
Target:  5'- cUGGCauuGGgacaaccGGGCauuccagGCCGUCGCCGUGg -3'
miRNA:   3'- uACCGg--CCa------UCCGg------UGGCAGCGGUAC- -5'
18981 5' -60.9 NC_004684.1 + 9391 0.7 0.250631
Target:  5'- -cGGCggggGGUAGcGCCACCGUCGgCGUc -3'
miRNA:   3'- uaCCGg---CCAUC-CGGUGGCAGCgGUAc -5'
18981 5' -60.9 NC_004684.1 + 9803 0.74 0.136186
Target:  5'- cUGcGCCGGUggcacccgacgcucaAGGCCACCGUCuuGCCGUc -3'
miRNA:   3'- uAC-CGGCCA---------------UCCGGUGGCAG--CGGUAc -5'
18981 5' -60.9 NC_004684.1 + 9937 0.66 0.455286
Target:  5'- uGUGGCCGGgcugaccaugcucUGGGUCGCCacgGUCAUGg -3'
miRNA:   3'- -UACCGGCC-------------AUCCGGUGGcagCGGUAC- -5'
18981 5' -60.9 NC_004684.1 + 11305 0.66 0.475494
Target:  5'- --cGCUGGU-GGCCACCGcUGCCuuUGg -3'
miRNA:   3'- uacCGGCCAuCCGGUGGCaGCGGu-AC- -5'
18981 5' -60.9 NC_004684.1 + 11933 0.7 0.25691
Target:  5'- -gGGCCGuccgcuGGCCAUgGUCGCCAg- -3'
miRNA:   3'- uaCCGGCcau---CCGGUGgCAGCGGUac -5'
18981 5' -60.9 NC_004684.1 + 12110 0.71 0.232551
Target:  5'- cAUGGCCuu--GGCCACCGcCGCCGc- -3'
miRNA:   3'- -UACCGGccauCCGGUGGCaGCGGUac -5'
18981 5' -60.9 NC_004684.1 + 12859 0.66 0.465814
Target:  5'- -aGGCCG--AGGCCGCCacCGCCGa- -3'
miRNA:   3'- uaCCGGCcaUCCGGUGGcaGCGGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.