miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18981 5' -60.9 NC_004684.1 + 42335 0.68 0.358582
Target:  5'- -cGGCCGcccuGGCCACCuacaUCGCCAa- -3'
miRNA:   3'- uaCCGGCcau-CCGGUGGc---AGCGGUac -5'
18981 5' -60.9 NC_004684.1 + 52622 0.69 0.297309
Target:  5'- -aGGUCGGUgccGGGCa--CGUCGCCAUc -3'
miRNA:   3'- uaCCGGCCA---UCCGgugGCAGCGGUAc -5'
18981 5' -60.9 NC_004684.1 + 51977 0.69 0.297309
Target:  5'- gGUGGCCacGGUGucGGCCAUCG-CGCCcUGc -3'
miRNA:   3'- -UACCGG--CCAU--CCGGUGGCaGCGGuAC- -5'
18981 5' -60.9 NC_004684.1 + 6682 0.69 0.31183
Target:  5'- aGUGGCCugcacaGGUcgaccuGGCCACCGUCGgCGc- -3'
miRNA:   3'- -UACCGG------CCAu-----CCGGUGGCAGCgGUac -5'
18981 5' -60.9 NC_004684.1 + 14051 0.69 0.31183
Target:  5'- -cGGCCGGUAccuGGUU-CCG-CGCCAUGc -3'
miRNA:   3'- uaCCGGCCAU---CCGGuGGCaGCGGUAC- -5'
18981 5' -60.9 NC_004684.1 + 57898 0.68 0.31929
Target:  5'- gGUGGCCGGgcugaAGGUgGCCGggcugacCGCCgAUGa -3'
miRNA:   3'- -UACCGGCCa----UCCGgUGGCa------GCGG-UAC- -5'
18981 5' -60.9 NC_004684.1 + 50037 0.68 0.326883
Target:  5'- cGUGGCCGGUgccuggcuccAGGCCaggaACCGgucgagcugCGCCuUGg -3'
miRNA:   3'- -UACCGGCCA----------UCCGG----UGGCa--------GCGGuAC- -5'
18981 5' -60.9 NC_004684.1 + 65750 0.68 0.326883
Target:  5'- uUGGCCucgcGGgcguuGGCCGCCGcgCGCCGg- -3'
miRNA:   3'- uACCGG----CCau---CCGGUGGCa-GCGGUac -5'
18981 5' -60.9 NC_004684.1 + 56048 0.68 0.35046
Target:  5'- -gGGCCuGG-AGGCCGCCGUCaaggcgcaaGgCGUGg -3'
miRNA:   3'- uaCCGG-CCaUCCGGUGGCAG---------CgGUAC- -5'
18981 5' -60.9 NC_004684.1 + 24843 0.69 0.283319
Target:  5'- -cGGCagCGGUAGcGCCACCGg-GCCGUu -3'
miRNA:   3'- uaCCG--GCCAUC-CGGUGGCagCGGUAc -5'
18981 5' -60.9 NC_004684.1 + 2366 0.69 0.281949
Target:  5'- cGUGGCCGccaucgacauGGCCACCuUCGCCGg- -3'
miRNA:   3'- -UACCGGCcau-------CCGGUGGcAGCGGUac -5'
18981 5' -60.9 NC_004684.1 + 55934 0.69 0.276521
Target:  5'- gGUGGaCCGGggcgAGGCCgacGCCGaCGCCGc- -3'
miRNA:   3'- -UACC-GGCCa---UCCGG---UGGCaGCGGUac -5'
18981 5' -60.9 NC_004684.1 + 63062 0.73 0.149866
Target:  5'- -cGGuuGGUGgcGGCUACCGUgcCGCCGUGc -3'
miRNA:   3'- uaCCggCCAU--CCGGUGGCA--GCGGUAC- -5'
18981 5' -60.9 NC_004684.1 + 39339 0.73 0.153882
Target:  5'- -aGGCCGGUuGGCCGCCcacUCGUCAa- -3'
miRNA:   3'- uaCCGGCCAuCCGGUGGc--AGCGGUac -5'
18981 5' -60.9 NC_004684.1 + 26319 0.73 0.162208
Target:  5'- -aGGCCGccGGGCCGCCGaUUGCCGa- -3'
miRNA:   3'- uaCCGGCcaUCCGGUGGC-AGCGGUac -5'
18981 5' -60.9 NC_004684.1 + 23008 0.72 0.180084
Target:  5'- -gGGCCGacuGGCCGCCGUCGgCAg- -3'
miRNA:   3'- uaCCGGCcauCCGGUGGCAGCgGUac -5'
18981 5' -60.9 NC_004684.1 + 7493 0.72 0.198662
Target:  5'- cUGGCUGGUugucuacgcgcuGGCCGCCG-CGCgCGUGa -3'
miRNA:   3'- uACCGGCCAu-----------CCGGUGGCaGCG-GUAC- -5'
18981 5' -60.9 NC_004684.1 + 2980 0.71 0.204867
Target:  5'- gGUGGCCaacgGGUugAGGCCaucACCG-CGCCGUGc -3'
miRNA:   3'- -UACCGG----CCA--UCCGG---UGGCaGCGGUAC- -5'
18981 5' -60.9 NC_004684.1 + 11933 0.7 0.25691
Target:  5'- -gGGCCGuccgcuGGCCAUgGUCGCCAg- -3'
miRNA:   3'- uaCCGGCcau---CCGGUGgCAGCGGUac -5'
18981 5' -60.9 NC_004684.1 + 37961 0.7 0.269854
Target:  5'- -aGGCCaucguccuGG-AGGCCAUCGUUGCCGa- -3'
miRNA:   3'- uaCCGG--------CCaUCCGGUGGCAGCGGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.