Results 1 - 20 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18983 | 3' | -54 | NC_004684.1 | + | 6361 | 1.08 | 0.002051 |
Target: 5'- cCAGCUACGACACCAAGAUGGGCGACGc -3' miRNA: 3'- -GUCGAUGCUGUGGUUCUACCCGCUGC- -5' |
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18983 | 3' | -54 | NC_004684.1 | + | 48702 | 0.79 | 0.197103 |
Target: 5'- aGGCgcACGGCACCGAGGUGGGCaAUGa -3' miRNA: 3'- gUCGa-UGCUGUGGUUCUACCCGcUGC- -5' |
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18983 | 3' | -54 | NC_004684.1 | + | 30485 | 0.77 | 0.262545 |
Target: 5'- uCGGCUAUGAC-CCGAGcgugGGGCGGCu -3' miRNA: 3'- -GUCGAUGCUGuGGUUCua--CCCGCUGc -5' |
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18983 | 3' | -54 | NC_004684.1 | + | 43430 | 0.74 | 0.369948 |
Target: 5'- aGGCccgGCGAgGCCGAGGUcGGuGCGGCGg -3' miRNA: 3'- gUCGa--UGCUgUGGUUCUA-CC-CGCUGC- -5' |
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18983 | 3' | -54 | NC_004684.1 | + | 62177 | 0.74 | 0.396549 |
Target: 5'- cCAGCUACGACgacgcgcuggcgACCGugcAGcaGUGGGUGGCGg -3' miRNA: 3'- -GUCGAUGCUG------------UGGU---UC--UACCCGCUGC- -5' |
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18983 | 3' | -54 | NC_004684.1 | + | 15388 | 0.73 | 0.424352 |
Target: 5'- uCGGCUACGAgGCCGccaucgGGGCGGCc -3' miRNA: 3'- -GUCGAUGCUgUGGUucua--CCCGCUGc -5' |
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18983 | 3' | -54 | NC_004684.1 | + | 63496 | 0.73 | 0.424352 |
Target: 5'- cCAGCUGCGccuGCGCCAGca-GGGCGGCc -3' miRNA: 3'- -GUCGAUGC---UGUGGUUcuaCCCGCUGc -5' |
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18983 | 3' | -54 | NC_004684.1 | + | 15223 | 0.72 | 0.473161 |
Target: 5'- -cGCUGgGACACCAguGGGUGuuuGGUGGCGg -3' miRNA: 3'- guCGAUgCUGUGGU--UCUAC---CCGCUGC- -5' |
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18983 | 3' | -54 | NC_004684.1 | + | 63604 | 0.72 | 0.473161 |
Target: 5'- gAGCUGCGACGCCAGGccgcccugcUGGcGCaGGCGc -3' miRNA: 3'- gUCGAUGCUGUGGUUCu--------ACC-CG-CUGC- -5' |
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18983 | 3' | -54 | NC_004684.1 | + | 24897 | 0.72 | 0.493464 |
Target: 5'- uGGCUACGAgauggccgcCGCCGcGAucagcgcgcUGGGCGGCGa -3' miRNA: 3'- gUCGAUGCU---------GUGGUuCU---------ACCCGCUGC- -5' |
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18983 | 3' | -54 | NC_004684.1 | + | 15271 | 0.72 | 0.503765 |
Target: 5'- -cGCUGCGcaGCACCAgucccAGGUGcguGGCGGCGg -3' miRNA: 3'- guCGAUGC--UGUGGU-----UCUAC---CCGCUGC- -5' |
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18983 | 3' | -54 | NC_004684.1 | + | 32418 | 0.71 | 0.524637 |
Target: 5'- aCAGCaGCGGCACCuc---GGGCGugGc -3' miRNA: 3'- -GUCGaUGCUGUGGuucuaCCCGCugC- -5' |
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18983 | 3' | -54 | NC_004684.1 | + | 20122 | 0.71 | 0.524637 |
Target: 5'- gGGCgGCGGCACCAAGAacgUGcgguucuucgccGGUGACGg -3' miRNA: 3'- gUCGaUGCUGUGGUUCU---AC------------CCGCUGC- -5' |
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18983 | 3' | -54 | NC_004684.1 | + | 61006 | 0.71 | 0.535196 |
Target: 5'- aGGCgUGCGACGCCGuggccgAGAUGGuCGAUGa -3' miRNA: 3'- gUCG-AUGCUGUGGU------UCUACCcGCUGC- -5' |
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18983 | 3' | -54 | NC_004684.1 | + | 2538 | 0.71 | 0.556529 |
Target: 5'- -cGCUGCGGCACCugcGUGGaGCGcGCGg -3' miRNA: 3'- guCGAUGCUGUGGuucUACC-CGC-UGC- -5' |
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18983 | 3' | -54 | NC_004684.1 | + | 39451 | 0.71 | 0.567289 |
Target: 5'- gGGCUGguucccCGACACCAuugacgaGUGGGCGGCc -3' miRNA: 3'- gUCGAU------GCUGUGGUuc-----UACCCGCUGc -5' |
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18983 | 3' | -54 | NC_004684.1 | + | 27886 | 0.7 | 0.609674 |
Target: 5'- uCGGCUACGACgacaguuggcccgGCCugcgcGAGuuccUGGGCGACa -3' miRNA: 3'- -GUCGAUGCUG-------------UGG-----UUCu---ACCCGCUGc -5' |
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18983 | 3' | -54 | NC_004684.1 | + | 66634 | 0.7 | 0.610767 |
Target: 5'- gCGGcCUugGugGCCAcGAUGgccucGGCGGCGg -3' miRNA: 3'- -GUC-GAugCugUGGUuCUAC-----CCGCUGC- -5' |
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18983 | 3' | -54 | NC_004684.1 | + | 24713 | 0.7 | 0.610767 |
Target: 5'- uCAGCgACGACaacACCGAGcUGGGCGuGCu -3' miRNA: 3'- -GUCGaUGCUG---UGGUUCuACCCGC-UGc -5' |
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18983 | 3' | -54 | NC_004684.1 | + | 4775 | 0.7 | 0.621704 |
Target: 5'- aAGCgccACGGCuCCGGGGUGcGCGACGc -3' miRNA: 3'- gUCGa--UGCUGuGGUUCUACcCGCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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