miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18983 3' -54 NC_004684.1 + 58311 0.69 0.676331
Target:  5'- aCAGCUcaccgGCGACGCCGGGucAUGGcGCGccCGg -3'
miRNA:   3'- -GUCGA-----UGCUGUGGUUC--UACC-CGCu-GC- -5'
18983 3' -54 NC_004684.1 + 18607 0.7 0.621704
Target:  5'- uGGCUuuGAgGCCAGcGAcUGGGCGACc -3'
miRNA:   3'- gUCGAugCUgUGGUU-CU-ACCCGCUGc -5'
18983 3' -54 NC_004684.1 + 4775 0.7 0.621704
Target:  5'- aAGCgccACGGCuCCGGGGUGcGCGACGc -3'
miRNA:   3'- gUCGa--UGCUGuGGUUCUACcCGCUGC- -5'
18983 3' -54 NC_004684.1 + 41323 0.69 0.654532
Target:  5'- gGGCUACGGCACCGcGAccGcCGACGg -3'
miRNA:   3'- gUCGAUGCUGUGGUuCUacCcGCUGC- -5'
18983 3' -54 NC_004684.1 + 15760 0.69 0.654532
Target:  5'- gCAGCUgcgcaGCGGCACCuaucGcgGcGGCGACa -3'
miRNA:   3'- -GUCGA-----UGCUGUGGuu--CuaC-CCGCUGc -5'
18983 3' -54 NC_004684.1 + 61582 0.69 0.654532
Target:  5'- gCAGCUGgGACGCCucGGUGGuCGAgGc -3'
miRNA:   3'- -GUCGAUgCUGUGGuuCUACCcGCUgC- -5'
18983 3' -54 NC_004684.1 + 64919 0.69 0.654532
Target:  5'- uGGCgGCGAC-CCAGGu--GGCGGCGg -3'
miRNA:   3'- gUCGaUGCUGuGGUUCuacCCGCUGC- -5'
18983 3' -54 NC_004684.1 + 30130 0.69 0.669805
Target:  5'- gAGCUACaGGCACCGcgcAGugugcgcgucggccaGUGGGCGAUc -3'
miRNA:   3'- gUCGAUG-CUGUGGU---UC---------------UACCCGCUGc -5'
18983 3' -54 NC_004684.1 + 25272 0.69 0.676331
Target:  5'- aAGCUGCG-CACCAAGGgccuuccgGccacaccaGGCGGCGg -3'
miRNA:   3'- gUCGAUGCuGUGGUUCUa-------C--------CCGCUGC- -5'
18983 3' -54 NC_004684.1 + 24713 0.7 0.610767
Target:  5'- uCAGCgACGACaacACCGAGcUGGGCGuGCu -3'
miRNA:   3'- -GUCGaUGCUG---UGGUUCuACCCGC-UGc -5'
18983 3' -54 NC_004684.1 + 66634 0.7 0.610767
Target:  5'- gCGGcCUugGugGCCAcGAUGgccucGGCGGCGg -3'
miRNA:   3'- -GUC-GAugCugUGGUuCUAC-----CCGCUGC- -5'
18983 3' -54 NC_004684.1 + 27886 0.7 0.609674
Target:  5'- uCGGCUACGACgacaguuggcccgGCCugcgcGAGuuccUGGGCGACa -3'
miRNA:   3'- -GUCGAUGCUG-------------UGG-----UUCu---ACCCGCUGc -5'
18983 3' -54 NC_004684.1 + 43430 0.74 0.369948
Target:  5'- aGGCccgGCGAgGCCGAGGUcGGuGCGGCGg -3'
miRNA:   3'- gUCGa--UGCUgUGGUUCUA-CC-CGCUGC- -5'
18983 3' -54 NC_004684.1 + 63496 0.73 0.424352
Target:  5'- cCAGCUGCGccuGCGCCAGca-GGGCGGCc -3'
miRNA:   3'- -GUCGAUGC---UGUGGUUcuaCCCGCUGc -5'
18983 3' -54 NC_004684.1 + 15388 0.73 0.424352
Target:  5'- uCGGCUACGAgGCCGccaucgGGGCGGCc -3'
miRNA:   3'- -GUCGAUGCUgUGGUucua--CCCGCUGc -5'
18983 3' -54 NC_004684.1 + 15223 0.72 0.473161
Target:  5'- -cGCUGgGACACCAguGGGUGuuuGGUGGCGg -3'
miRNA:   3'- guCGAUgCUGUGGU--UCUAC---CCGCUGC- -5'
18983 3' -54 NC_004684.1 + 24897 0.72 0.493464
Target:  5'- uGGCUACGAgauggccgcCGCCGcGAucagcgcgcUGGGCGGCGa -3'
miRNA:   3'- gUCGAUGCU---------GUGGUuCU---------ACCCGCUGC- -5'
18983 3' -54 NC_004684.1 + 32418 0.71 0.524637
Target:  5'- aCAGCaGCGGCACCuc---GGGCGugGc -3'
miRNA:   3'- -GUCGaUGCUGUGGuucuaCCCGCugC- -5'
18983 3' -54 NC_004684.1 + 20122 0.71 0.524637
Target:  5'- gGGCgGCGGCACCAAGAacgUGcgguucuucgccGGUGACGg -3'
miRNA:   3'- gUCGaUGCUGUGGUUCU---AC------------CCGCUGC- -5'
18983 3' -54 NC_004684.1 + 2538 0.71 0.556529
Target:  5'- -cGCUGCGGCACCugcGUGGaGCGcGCGg -3'
miRNA:   3'- guCGAUGCUGUGGuucUACC-CGC-UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.