miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18983 3' -54 NC_004684.1 + 1101 0.66 0.846004
Target:  5'- aGGCcGCGACccggcgcaacugGCaCGAGAUGGuCGACGg -3'
miRNA:   3'- gUCGaUGCUG------------UG-GUUCUACCcGCUGC- -5'
18983 3' -54 NC_004684.1 + 2538 0.71 0.556529
Target:  5'- -cGCUGCGGCACCugcGUGGaGCGcGCGg -3'
miRNA:   3'- guCGAUGCUGUGGuucUACC-CGC-UGC- -5'
18983 3' -54 NC_004684.1 + 3562 0.67 0.750747
Target:  5'- gCGGCccgGCGugGCUGAGcuUGGGCGAg- -3'
miRNA:   3'- -GUCGa--UGCugUGGUUCu-ACCCGCUgc -5'
18983 3' -54 NC_004684.1 + 4775 0.7 0.621704
Target:  5'- aAGCgccACGGCuCCGGGGUGcGCGACGc -3'
miRNA:   3'- gUCGa--UGCUGuGGUUCUACcCGCUGC- -5'
18983 3' -54 NC_004684.1 + 6361 1.08 0.002051
Target:  5'- cCAGCUACGACACCAAGAUGGGCGACGc -3'
miRNA:   3'- -GUCGAUGCUGUGGUUCUACCCGCUGC- -5'
18983 3' -54 NC_004684.1 + 6388 0.68 0.708692
Target:  5'- gCAGCguguugGCGAaguugGCCGAGGUGuacagcucGGCGGCGg -3'
miRNA:   3'- -GUCGa-----UGCUg----UGGUUCUAC--------CCGCUGC- -5'
18983 3' -54 NC_004684.1 + 6838 0.68 0.719345
Target:  5'- uGGcCUACGGCGCgAA---GGGCGACGc -3'
miRNA:   3'- gUC-GAUGCUGUGgUUcuaCCCGCUGC- -5'
18983 3' -54 NC_004684.1 + 11289 0.66 0.849415
Target:  5'- gAGCUGauCGGCACCAcgcuGGUGgccaccgcugccuuuGGCGACa -3'
miRNA:   3'- gUCGAU--GCUGUGGUu---CUAC---------------CCGCUGc -5'
18983 3' -54 NC_004684.1 + 12844 0.69 0.665447
Target:  5'- gCAGCcGCGcGgGCCAAGA-GGGCGuCGa -3'
miRNA:   3'- -GUCGaUGC-UgUGGUUCUaCCCGCuGC- -5'
18983 3' -54 NC_004684.1 + 13204 0.69 0.665447
Target:  5'- aAGCUGCcGCGCUGGccGGUgGGGCGGCGu -3'
miRNA:   3'- gUCGAUGcUGUGGUU--CUA-CCCGCUGC- -5'
18983 3' -54 NC_004684.1 + 15223 0.72 0.473161
Target:  5'- -cGCUGgGACACCAguGGGUGuuuGGUGGCGg -3'
miRNA:   3'- guCGAUgCUGUGGU--UCUAC---CCGCUGC- -5'
18983 3' -54 NC_004684.1 + 15271 0.72 0.503765
Target:  5'- -cGCUGCGcaGCACCAgucccAGGUGcguGGCGGCGg -3'
miRNA:   3'- guCGAUGC--UGUGGU-----UCUAC---CCGCUGC- -5'
18983 3' -54 NC_004684.1 + 15388 0.73 0.424352
Target:  5'- uCGGCUACGAgGCCGccaucgGGGCGGCc -3'
miRNA:   3'- -GUCGAUGCUgUGGUucua--CCCGCUGc -5'
18983 3' -54 NC_004684.1 + 15760 0.69 0.654532
Target:  5'- gCAGCUgcgcaGCGGCACCuaucGcgGcGGCGACa -3'
miRNA:   3'- -GUCGA-----UGCUGUGGuu--CuaC-CCGCUGc -5'
18983 3' -54 NC_004684.1 + 16787 0.66 0.810027
Target:  5'- cCAGgUGCGGCGCgucguguGGUGGGCG-CGc -3'
miRNA:   3'- -GUCgAUGCUGUGguu----CUACCCGCuGC- -5'
18983 3' -54 NC_004684.1 + 18423 0.66 0.819323
Target:  5'- uCGGCUccggggGCGGCACCGgcgugcGGAacaGGGUGAUGu -3'
miRNA:   3'- -GUCGA------UGCUGUGGU------UCUa--CCCGCUGC- -5'
18983 3' -54 NC_004684.1 + 18607 0.7 0.621704
Target:  5'- uGGCUuuGAgGCCAGcGAcUGGGCGACc -3'
miRNA:   3'- gUCGAugCUgUGGUU-CU-ACCCGCUGc -5'
18983 3' -54 NC_004684.1 + 19683 0.67 0.780084
Target:  5'- cCGGCgcgGCGGCaaggccuggccgaGCCAAGAccUGGGaCGGCc -3'
miRNA:   3'- -GUCGa--UGCUG-------------UGGUUCU--ACCC-GCUGc -5'
18983 3' -54 NC_004684.1 + 20122 0.71 0.524637
Target:  5'- gGGCgGCGGCACCAAGAacgUGcgguucuucgccGGUGACGg -3'
miRNA:   3'- gUCGaUGCUGUGGUUCU---AC------------CCGCUGC- -5'
18983 3' -54 NC_004684.1 + 20306 0.66 0.846004
Target:  5'- -uGCgcCGACACCAug--GcGGCGGCGg -3'
miRNA:   3'- guCGauGCUGUGGUucuaC-CCGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.