miRNA display CGI


Results 41 - 60 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18984 3' -57.1 NC_004684.1 + 21384 0.68 0.550782
Target:  5'- cGCCUgcguugcgcagauaCGGCCGGGCGCGcgugccGGGGUGg--- -3'
miRNA:   3'- -CGGA--------------GCCGGUUCGCGC------UUCCGCaagu -5'
18984 3' -57.1 NC_004684.1 + 47843 0.68 0.553935
Target:  5'- cGCCUgaCGGCacguAGCGCGAaccggAGGCGg--- -3'
miRNA:   3'- -CGGA--GCCGgu--UCGCGCU-----UCCGCaagu -5'
18984 3' -57.1 NC_004684.1 + 61197 0.68 0.564484
Target:  5'- gGCCUCggcguacaccuGGCCGuuCGCGucGGCGaUCAg -3'
miRNA:   3'- -CGGAG-----------CCGGUucGCGCuuCCGCaAGU- -5'
18984 3' -57.1 NC_004684.1 + 6222 0.68 0.564484
Target:  5'- aUCUCGGCCAGcuGgGCGGccAGGCcUUCGa -3'
miRNA:   3'- cGGAGCCGGUU--CgCGCU--UCCGcAAGU- -5'
18984 3' -57.1 NC_004684.1 + 21204 0.68 0.564484
Target:  5'- uCCg-GGCCAAGCacGCGcAGGCGcUUCAc -3'
miRNA:   3'- cGGagCCGGUUCG--CGCuUCCGC-AAGU- -5'
18984 3' -57.1 NC_004684.1 + 3805 0.67 0.571899
Target:  5'- cGCCUUGGCgGucaaggaucugcugGGCGCGuucGGCGUg-- -3'
miRNA:   3'- -CGGAGCCGgU--------------UCGCGCuu-CCGCAagu -5'
18984 3' -57.1 NC_004684.1 + 43623 0.67 0.575084
Target:  5'- gGCCacggugUGGCCGAGCGCGGuga-GUUCGu -3'
miRNA:   3'- -CGGa-----GCCGGUUCGCGCUuccgCAAGU- -5'
18984 3' -57.1 NC_004684.1 + 42533 0.67 0.575084
Target:  5'- cGCCgUGGUCGGcGUGCuGAcGGCGUUCGg -3'
miRNA:   3'- -CGGaGCCGGUU-CGCG-CUuCCGCAAGU- -5'
18984 3' -57.1 NC_004684.1 + 33471 0.67 0.58573
Target:  5'- uGCCUCGGCgGcggcugcgguGGaCGCGgcGGCGg--- -3'
miRNA:   3'- -CGGAGCCGgU----------UC-GCGCuuCCGCaagu -5'
18984 3' -57.1 NC_004684.1 + 34551 0.67 0.58573
Target:  5'- gGCCaUGGCCAgcuacgagAGCGCGcuGGCGg--- -3'
miRNA:   3'- -CGGaGCCGGU--------UCGCGCuuCCGCaagu -5'
18984 3' -57.1 NC_004684.1 + 40438 0.67 0.58573
Target:  5'- gGCCUUGGUCAgcGGUGCccAGGCGg--- -3'
miRNA:   3'- -CGGAGCCGGU--UCGCGcuUCCGCaagu -5'
18984 3' -57.1 NC_004684.1 + 41682 0.67 0.58573
Target:  5'- aCCUCGGCaacacccAGCGCGGcgacGGCGUgcgguUCAa -3'
miRNA:   3'- cGGAGCCGgu-----UCGCGCUu---CCGCA-----AGU- -5'
18984 3' -57.1 NC_004684.1 + 61347 0.67 0.58573
Target:  5'- gGUggCGGCCAGGUgaaugGUGguGGCGUUCGa -3'
miRNA:   3'- -CGgaGCCGGUUCG-----CGCuuCCGCAAGU- -5'
18984 3' -57.1 NC_004684.1 + 1953 0.67 0.58573
Target:  5'- cCUUCGGCCAGGUggauauGCGGcccGGCGUUg- -3'
miRNA:   3'- cGGAGCCGGUUCG------CGCUu--CCGCAAgu -5'
18984 3' -57.1 NC_004684.1 + 63560 0.67 0.58573
Target:  5'- gGCCUCGcgcccccgaauGCCGgaacugGGCgGCGAAGGCGacCAc -3'
miRNA:   3'- -CGGAGC-----------CGGU------UCG-CGCUUCCGCaaGU- -5'
18984 3' -57.1 NC_004684.1 + 56049 0.67 0.595342
Target:  5'- gGCCUggaGGCCGccgucaaGGCGC-AAGGCGUg-- -3'
miRNA:   3'- -CGGAg--CCGGU-------UCGCGcUUCCGCAagu -5'
18984 3' -57.1 NC_004684.1 + 25287 0.67 0.596412
Target:  5'- gGCCUucCGGCCAcaccAG-GCGgcGGCGgUUCGu -3'
miRNA:   3'- -CGGA--GCCGGU----UCgCGCuuCCGC-AAGU- -5'
18984 3' -57.1 NC_004684.1 + 43957 0.67 0.596412
Target:  5'- cGCCgucgaGGCCGAGCaucagccguGCGcGGGCGUa-- -3'
miRNA:   3'- -CGGag---CCGGUUCG---------CGCuUCCGCAagu -5'
18984 3' -57.1 NC_004684.1 + 65590 0.67 0.596412
Target:  5'- gGCCUCGGUCAugAGCcgcaCGgcGGCGUc-- -3'
miRNA:   3'- -CGGAGCCGGU--UCGc---GCuuCCGCAagu -5'
18984 3' -57.1 NC_004684.1 + 32096 0.67 0.606051
Target:  5'- aGCgUUGGCCAGGCGguggaguccacacCGGAGGaCGUg-- -3'
miRNA:   3'- -CGgAGCCGGUUCGC-------------GCUUCC-GCAagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.