miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18985 3' -56.9 NC_004684.1 + 37258 0.68 0.591358
Target:  5'- uGCUCGGcgcGaCGUggcCCuCGGCGCGCu -3'
miRNA:   3'- -CGAGCCua-C-GCAagaGGuGCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 11907 0.66 0.686844
Target:  5'- cGC-CGGAcagcgGCGcgcucgcgcccUUCUCCACGGUG-GCc -3'
miRNA:   3'- -CGaGCCUa----CGC-----------AAGAGGUGCCGCgCG- -5'
18985 3' -56.9 NC_004684.1 + 10215 0.67 0.665723
Target:  5'- aGgUCaGcgGCGUUCUCCAgGuccaCGCGCu -3'
miRNA:   3'- -CgAGcCuaCGCAAGAGGUgCc---GCGCG- -5'
18985 3' -56.9 NC_004684.1 + 2646 0.68 0.589243
Target:  5'- cCUCGGcgaaggccuccGCGcgCUCCACgcaGGUGCGCa -3'
miRNA:   3'- cGAGCCua---------CGCaaGAGGUG---CCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 3176 0.66 0.72944
Target:  5'- aGCUCGGAaaccgggagcacggaGCGggggUCgaUCAuCGGCGCGCc -3'
miRNA:   3'- -CGAGCCUa--------------CGCa---AGa-GGU-GCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 56409 0.68 0.5598
Target:  5'- aCUCGcGcagcGCGgUCUCCAcguccCGGCGCGCc -3'
miRNA:   3'- cGAGC-Cua--CGCaAGAGGU-----GCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 20680 0.69 0.540052
Target:  5'- cGCUCGGcgugaGCGUgccuucgacggugacCUCCACGGUGCc- -3'
miRNA:   3'- -CGAGCCua---CGCAa--------------GAGGUGCCGCGcg -5'
18985 3' -56.9 NC_004684.1 + 57632 0.68 0.61257
Target:  5'- aGCUCGGcgGuCGcgCUCUggaGGCGgGCc -3'
miRNA:   3'- -CGAGCCuaC-GCaaGAGGug-CCGCgCG- -5'
18985 3' -56.9 NC_004684.1 + 27169 0.66 0.728417
Target:  5'- aGCUaCGGcgGCGacCUggCCACGGCGaucuuugGCg -3'
miRNA:   3'- -CGA-GCCuaCGCaaGA--GGUGCCGCg------CG- -5'
18985 3' -56.9 NC_004684.1 + 24521 0.67 0.623204
Target:  5'- cGUUCGGcgGUGccaUCUaCgGCGGUGUGCc -3'
miRNA:   3'- -CGAGCCuaCGCa--AGA-GgUGCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 26551 0.68 0.61257
Target:  5'- gGC-CGGGguguacGCGUUCcggcgcgCCcUGGCGCGCg -3'
miRNA:   3'- -CGaGCCUa-----CGCAAGa------GGuGCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 57181 0.68 0.61257
Target:  5'- cGCUCGGGcgcagGCGggCcuggaaggCgGCGGCGCGa -3'
miRNA:   3'- -CGAGCCUa----CGCaaGa-------GgUGCCGCGCg -5'
18985 3' -56.9 NC_004684.1 + 19540 0.68 0.592416
Target:  5'- aGCUgCGGGUGCGccgggcggugccaggUCUCCGggccUGGCGuCGUg -3'
miRNA:   3'- -CGA-GCCUACGCa--------------AGAGGU----GCCGC-GCG- -5'
18985 3' -56.9 NC_004684.1 + 53806 0.7 0.468708
Target:  5'- -aUCGGGuUGCGc-CUCCAUgcgGGCGUGCg -3'
miRNA:   3'- cgAGCCU-ACGCaaGAGGUG---CCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 60319 0.66 0.686844
Target:  5'- cCUCGGcaAUGCGUUCgagcgcgaUCACcGCGCGUu -3'
miRNA:   3'- cGAGCC--UACGCAAGa-------GGUGcCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 17279 0.66 0.707769
Target:  5'- uGCUCGGcgGCGcugguuUUCUggCCGgGGuCGCGg -3'
miRNA:   3'- -CGAGCCuaCGC------AAGA--GGUgCC-GCGCg -5'
18985 3' -56.9 NC_004684.1 + 21655 0.66 0.718133
Target:  5'- cGCUCucg-GCGUUCUCCAucuCGGUGuCGa -3'
miRNA:   3'- -CGAGccuaCGCAAGAGGU---GCCGC-GCg -5'
18985 3' -56.9 NC_004684.1 + 23687 0.71 0.421475
Target:  5'- gGCcCGGAccagaGCGUggcCUCCaaccugggcgGCGGCGCGCu -3'
miRNA:   3'- -CGaGCCUa----CGCAa--GAGG----------UGCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 61922 0.66 0.728417
Target:  5'- cGCg-GGGUGCGgg--CCACGGCaccCGCc -3'
miRNA:   3'- -CGagCCUACGCaagaGGUGCCGc--GCG- -5'
18985 3' -56.9 NC_004684.1 + 44647 0.66 0.728417
Target:  5'- aCUCGGcccacUGCGUcacccgCUgCUGCGGCgGCGCg -3'
miRNA:   3'- cGAGCCu----ACGCAa-----GA-GGUGCCG-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.