miRNA display CGI


Results 41 - 60 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18986 3' -52.7 NC_004684.1 + 54522 0.71 0.638478
Target:  5'- uCACCGGcgGggGU--ACGAgCGCCGu -3'
miRNA:   3'- cGUGGCCuaCuuCAugUGCUgGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 44628 0.71 0.638478
Target:  5'- aGCGCCGGggGGagcgGGUACuCGGcCCACUGc -3'
miRNA:   3'- -CGUGGCCuaCU----UCAUGuGCU-GGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 26713 0.71 0.638478
Target:  5'- cGCGCCGacGGUGucGUugGCGaugacgccGCCGCCGg -3'
miRNA:   3'- -CGUGGC--CUACuuCAugUGC--------UGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 2714 0.71 0.638478
Target:  5'- gGUGCCGGggGcAAGUgcgccacaccGCACGGCCACaCGu -3'
miRNA:   3'- -CGUGGCCuaC-UUCA----------UGUGCUGGUG-GC- -5'
18986 3' -52.7 NC_004684.1 + 50460 0.71 0.649396
Target:  5'- cGCACCgagcGGGUGAAGa--ACG-CCGCCGa -3'
miRNA:   3'- -CGUGG----CCUACUUCaugUGCuGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 52905 0.71 0.649396
Target:  5'- uGCGCCGGGgccaccgagGAGGaGCGCGAggagaaCCGCCa -3'
miRNA:   3'- -CGUGGCCUa--------CUUCaUGUGCU------GGUGGc -5'
18986 3' -52.7 NC_004684.1 + 14195 0.71 0.660298
Target:  5'- uCACCuGGAgcugcuccuUGggGUACAUGACCcCCa -3'
miRNA:   3'- cGUGG-CCU---------ACuuCAUGUGCUGGuGGc -5'
18986 3' -52.7 NC_004684.1 + 39056 0.71 0.660298
Target:  5'- uGCGCCGGGUGGccagcGUcaACACGAUCaugaagGCCGg -3'
miRNA:   3'- -CGUGGCCUACUu----CA--UGUGCUGG------UGGC- -5'
18986 3' -52.7 NC_004684.1 + 16460 0.71 0.660298
Target:  5'- uGUGCCGGGU---GUACuCGGCCGCCa -3'
miRNA:   3'- -CGUGGCCUAcuuCAUGuGCUGGUGGc -5'
18986 3' -52.7 NC_004684.1 + 47131 0.71 0.671175
Target:  5'- uGCGCCucGGUGgcGUAgGCGGCC-CCGg -3'
miRNA:   3'- -CGUGGc-CUACuuCAUgUGCUGGuGGC- -5'
18986 3' -52.7 NC_004684.1 + 53863 0.71 0.671175
Target:  5'- cGCGCCGGucuGGG-ACcCGACCACCa -3'
miRNA:   3'- -CGUGGCCuacUUCaUGuGCUGGUGGc -5'
18986 3' -52.7 NC_004684.1 + 21584 0.71 0.671175
Target:  5'- cCACC-GAUGGA-UGCACGACUACCu -3'
miRNA:   3'- cGUGGcCUACUUcAUGUGCUGGUGGc -5'
18986 3' -52.7 NC_004684.1 + 26642 0.71 0.671175
Target:  5'- cGCGCCGGAacgcGUACACcccggccuGACCGCCc -3'
miRNA:   3'- -CGUGGCCUacuuCAUGUG--------CUGGUGGc -5'
18986 3' -52.7 NC_004684.1 + 43248 0.71 0.671175
Target:  5'- cGCGCgGGccGGAGaGCACGGCCaugucGCCGc -3'
miRNA:   3'- -CGUGgCCuaCUUCaUGUGCUGG-----UGGC- -5'
18986 3' -52.7 NC_004684.1 + 7564 0.7 0.680933
Target:  5'- gGCcCCGGGUGGcgcuggugcggcuGGUGCGCGGCaacCCGg -3'
miRNA:   3'- -CGuGGCCUACU-------------UCAUGUGCUGgu-GGC- -5'
18986 3' -52.7 NC_004684.1 + 17560 0.7 0.680933
Target:  5'- cGC-CUGGAcGAGGUGCGCGcacuguaaggugcACCGCUGg -3'
miRNA:   3'- -CGuGGCCUaCUUCAUGUGC-------------UGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 64249 0.7 0.682016
Target:  5'- gGCGCUGGGUGuuGGcGCAC-ACCACCc -3'
miRNA:   3'- -CGUGGCCUACu-UCaUGUGcUGGUGGc -5'
18986 3' -52.7 NC_004684.1 + 57901 0.7 0.682016
Target:  5'- -gGCCGGGcUGAAGgugGCcggGCuGACCGCCGa -3'
miRNA:   3'- cgUGGCCU-ACUUCa--UG---UG-CUGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 62463 0.7 0.682016
Target:  5'- cGCuCCGGGaggUGGccGUugGCGACCGCCu -3'
miRNA:   3'- -CGuGGCCU---ACUu-CAugUGCUGGUGGc -5'
18986 3' -52.7 NC_004684.1 + 61291 0.7 0.682016
Target:  5'- uGCGCCGGGUcGAuuuccGGcaGCACcGCCGCCGg -3'
miRNA:   3'- -CGUGGCCUA-CU-----UCa-UGUGcUGGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.