miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18987 3' -56.7 NC_004684.1 + 42079 0.66 0.725169
Target:  5'- gUCGcCAGCGGCCaCCGCGcgggcauagaacgccUUGCgGUCc -3'
miRNA:   3'- -AGCaGUCGCUGGaGGUGC---------------AGCGaCAG- -5'
18987 3' -56.7 NC_004684.1 + 734 0.66 0.721026
Target:  5'- gCGUCGGUGuCCUUgGgGUCGCcGUg -3'
miRNA:   3'- aGCAGUCGCuGGAGgUgCAGCGaCAg -5'
18987 3' -56.7 NC_004684.1 + 4439 0.66 0.700122
Target:  5'- gUCGUCGGaGACCUCaGCgGUgGgUGUCa -3'
miRNA:   3'- -AGCAGUCgCUGGAGgUG-CAgCgACAG- -5'
18987 3' -56.7 NC_004684.1 + 59922 0.66 0.700122
Target:  5'- cUUGUCAGCGucgguguccgGCC-CCACGUgcgCGUUGUg -3'
miRNA:   3'- -AGCAGUCGC----------UGGaGGUGCA---GCGACAg -5'
18987 3' -56.7 NC_004684.1 + 18448 0.66 0.689571
Target:  5'- aUGUCgAGCGGCa-CCGCGcCGCcgGUCg -3'
miRNA:   3'- aGCAG-UCGCUGgaGGUGCaGCGa-CAG- -5'
18987 3' -56.7 NC_004684.1 + 40579 0.66 0.689571
Target:  5'- --cUCGGUGAUCUCCGgGUCGgUGg- -3'
miRNA:   3'- agcAGUCGCUGGAGGUgCAGCgACag -5'
18987 3' -56.7 NC_004684.1 + 61614 0.66 0.678968
Target:  5'- aCGcCAGCG-CCUgCACGUCacuGCUGg- -3'
miRNA:   3'- aGCaGUCGCuGGAgGUGCAG---CGACag -5'
18987 3' -56.7 NC_004684.1 + 64785 0.66 0.678968
Target:  5'- cUGUCGGCGAagCUgaCCACGccguuggUGCUGUCg -3'
miRNA:   3'- aGCAGUCGCUg-GA--GGUGCa------GCGACAG- -5'
18987 3' -56.7 NC_004684.1 + 59817 0.67 0.668323
Target:  5'- -gGUCGGCGGCCU--ACGUCGUggaUCg -3'
miRNA:   3'- agCAGUCGCUGGAggUGCAGCGac-AG- -5'
18987 3' -56.7 NC_004684.1 + 14520 0.67 0.668323
Target:  5'- aUCGUCuucGGCGACgUaccggUCACGUCGaaGUCg -3'
miRNA:   3'- -AGCAG---UCGCUGgA-----GGUGCAGCgaCAG- -5'
18987 3' -56.7 NC_004684.1 + 65078 0.67 0.646945
Target:  5'- cCGcUGGCGAgCCgcagacCCGCGUCGCgGUCa -3'
miRNA:   3'- aGCaGUCGCU-GGa-----GGUGCAGCGaCAG- -5'
18987 3' -56.7 NC_004684.1 + 39905 0.67 0.646945
Target:  5'- -aGUCGGCGGgUUCUuuGUCGUUGUg -3'
miRNA:   3'- agCAGUCGCUgGAGGugCAGCGACAg -5'
18987 3' -56.7 NC_004684.1 + 9508 0.67 0.636232
Target:  5'- cCGUCucGCGGCUgUCCAgGcuggccugaUCGCUGUCg -3'
miRNA:   3'- aGCAGu-CGCUGG-AGGUgC---------AGCGACAG- -5'
18987 3' -56.7 NC_004684.1 + 22099 0.67 0.629802
Target:  5'- -gGUCGGCGagcaccggccccaugGCCUCCugGaccgCGCggGUCa -3'
miRNA:   3'- agCAGUCGC---------------UGGAGGugCa---GCGa-CAG- -5'
18987 3' -56.7 NC_004684.1 + 43060 0.67 0.625515
Target:  5'- gCGggCGGCGACCacgUCCuCGUCGgUGUa -3'
miRNA:   3'- aGCa-GUCGCUGG---AGGuGCAGCgACAg -5'
18987 3' -56.7 NC_004684.1 + 7894 0.68 0.604108
Target:  5'- aCGUCAGCGugC-CCugGUgGCcGcCa -3'
miRNA:   3'- aGCAGUCGCugGaGGugCAgCGaCaG- -5'
18987 3' -56.7 NC_004684.1 + 21549 0.68 0.604108
Target:  5'- cUCGUCGGUGGucgggguguCCUCUcCGUCGUcGUCc -3'
miRNA:   3'- -AGCAGUCGCU---------GGAGGuGCAGCGaCAG- -5'
18987 3' -56.7 NC_004684.1 + 37571 0.68 0.604108
Target:  5'- gUCGUaCAcgaGGCCUCCuauACGgCGCUGUCg -3'
miRNA:   3'- -AGCA-GUcg-CUGGAGG---UGCaGCGACAG- -5'
18987 3' -56.7 NC_004684.1 + 2154 0.68 0.593434
Target:  5'- gCGUCGGUGAaCUCgGCGUUGacgGUCa -3'
miRNA:   3'- aGCAGUCGCUgGAGgUGCAGCga-CAG- -5'
18987 3' -56.7 NC_004684.1 + 10590 0.68 0.593434
Target:  5'- cCGUCGGCGGCC-CaguGCGUCgGCcggGUCu -3'
miRNA:   3'- aGCAGUCGCUGGaGg--UGCAG-CGa--CAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.