miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18988 5' -59.2 NC_004684.1 + 8086 1.07 0.000681
Target:  5'- uACCGCGUCGUAGGCCUUCCAGGCGUCc -3'
miRNA:   3'- -UGGCGCAGCAUCCGGAAGGUCCGCAG- -5'
18988 5' -59.2 NC_004684.1 + 48659 0.73 0.200424
Target:  5'- cACCGCGcCGgagAGGCCUUcaCCGGGCa-- -3'
miRNA:   3'- -UGGCGCaGCa--UCCGGAA--GGUCCGcag -5'
18988 5' -59.2 NC_004684.1 + 38065 0.73 0.210968
Target:  5'- cACCGCGUCGgcaacgauGGCC-UCCAGGaCGa- -3'
miRNA:   3'- -UGGCGCAGCau------CCGGaAGGUCC-GCag -5'
18988 5' -59.2 NC_004684.1 + 24676 0.73 0.216418
Target:  5'- gGCgGUGagGUuccAGGCCUgccgaccauUCCAGGCGUCa -3'
miRNA:   3'- -UGgCGCagCA---UCCGGA---------AGGUCCGCAG- -5'
18988 5' -59.2 NC_004684.1 + 59518 0.73 0.216418
Target:  5'- -gCGCGUCGUAGGCCUgcgCaCAGGUc-- -3'
miRNA:   3'- ugGCGCAGCAUCCGGAa--G-GUCCGcag -5'
18988 5' -59.2 NC_004684.1 + 66444 0.73 0.221987
Target:  5'- cCCGCGUCGcccuGGCCgcCCGccccGGCGUCa -3'
miRNA:   3'- uGGCGCAGCau--CCGGaaGGU----CCGCAG- -5'
18988 5' -59.2 NC_004684.1 + 6919 0.72 0.23883
Target:  5'- uUCGCGcCGUAGGCCagcuccUCCAggccgacGGCGUCg -3'
miRNA:   3'- uGGCGCaGCAUCCGGa-----AGGU-------CCGCAG- -5'
18988 5' -59.2 NC_004684.1 + 52722 0.72 0.239429
Target:  5'- cGCCaCGcUCGUAGGCgCUguccUCCAGGuCGUCg -3'
miRNA:   3'- -UGGcGC-AGCAUCCG-GA----AGGUCC-GCAG- -5'
18988 5' -59.2 NC_004684.1 + 24508 0.72 0.26445
Target:  5'- --gGCGUCGacuucggccUGGGCCUUCUuGGUGUCg -3'
miRNA:   3'- uggCGCAGC---------AUCCGGAAGGuCCGCAG- -5'
18988 5' -59.2 NC_004684.1 + 22371 0.71 0.271028
Target:  5'- cGCCGCG-CGggccuuGGCCgccgCCAGGCGg- -3'
miRNA:   3'- -UGGCGCaGCau----CCGGaa--GGUCCGCag -5'
18988 5' -59.2 NC_004684.1 + 9981 0.71 0.277737
Target:  5'- gACCacuCGUCGgcGGCCUgcUCCugcgcGGCGUCg -3'
miRNA:   3'- -UGGc--GCAGCauCCGGA--AGGu----CCGCAG- -5'
18988 5' -59.2 NC_004684.1 + 44133 0.69 0.368617
Target:  5'- cCCGCGUCGUuGaGCa--CCAGGCGcUCg -3'
miRNA:   3'- uGGCGCAGCAuC-CGgaaGGUCCGC-AG- -5'
18988 5' -59.2 NC_004684.1 + 2754 0.69 0.385615
Target:  5'- uCgGCGUCGaguGGaCgUUCCAGGUGUCc -3'
miRNA:   3'- uGgCGCAGCau-CC-GgAAGGUCCGCAG- -5'
18988 5' -59.2 NC_004684.1 + 51591 0.69 0.394306
Target:  5'- gACCGgGUgGUccaAGGUC-UCCAGGUGUUc -3'
miRNA:   3'- -UGGCgCAgCA---UCCGGaAGGUCCGCAG- -5'
18988 5' -59.2 NC_004684.1 + 16362 0.69 0.394306
Target:  5'- cGCCGCGUCGggcccGGCgCgaacaCCGGGCGa- -3'
miRNA:   3'- -UGGCGCAGCau---CCG-Gaa---GGUCCGCag -5'
18988 5' -59.2 NC_004684.1 + 31303 0.68 0.421127
Target:  5'- cACCgGCGUCGgccAGGUcguCUUCCAGGCc-- -3'
miRNA:   3'- -UGG-CGCAGCa--UCCG---GAAGGUCCGcag -5'
18988 5' -59.2 NC_004684.1 + 2376 0.68 0.421127
Target:  5'- cACCGCGUCGU-GGC---CCAGGCu-- -3'
miRNA:   3'- -UGGCGCAGCAuCCGgaaGGUCCGcag -5'
18988 5' -59.2 NC_004684.1 + 50650 0.68 0.430309
Target:  5'- cACCGcCGUCGgGGGUgCggaCCAGGCGUg -3'
miRNA:   3'- -UGGC-GCAGCaUCCG-Gaa-GGUCCGCAg -5'
18988 5' -59.2 NC_004684.1 + 6852 0.68 0.443358
Target:  5'- uGCCGuCGagcacuUCGUgcacccgacggcuccGGGCCagCCAGGUGUCg -3'
miRNA:   3'- -UGGC-GC------AGCA---------------UCCGGaaGGUCCGCAG- -5'
18988 5' -59.2 NC_004684.1 + 30777 0.68 0.449019
Target:  5'- cACCgGCGUgagCGUGucGCCUUCCAGGUGg- -3'
miRNA:   3'- -UGG-CGCA---GCAUc-CGGAAGGUCCGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.