miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18988 5' -59.2 NC_004684.1 + 48659 0.73 0.200424
Target:  5'- cACCGCGcCGgagAGGCCUUcaCCGGGCa-- -3'
miRNA:   3'- -UGGCGCaGCa--UCCGGAA--GGUCCGcag -5'
18988 5' -59.2 NC_004684.1 + 47261 0.66 0.579809
Target:  5'- gGCUGCG-CGgaacAGGCCcUCCAGGUugGUg -3'
miRNA:   3'- -UGGCGCaGCa---UCCGGaAGGUCCG--CAg -5'
18988 5' -59.2 NC_004684.1 + 13863 0.66 0.579809
Target:  5'- uCCGCGcCGaccuGGCCaUUCaggaGGGUGUCg -3'
miRNA:   3'- uGGCGCaGCau--CCGG-AAGg---UCCGCAG- -5'
18988 5' -59.2 NC_004684.1 + 50967 0.66 0.569328
Target:  5'- cGCCagcaCGUCGUAGGCCgaccCCuGGCa-- -3'
miRNA:   3'- -UGGc---GCAGCAUCCGGaa--GGuCCGcag -5'
18988 5' -59.2 NC_004684.1 + 3521 0.66 0.569328
Target:  5'- cGCCGaCGg-GUGGGCCgaCCuGGCGg- -3'
miRNA:   3'- -UGGC-GCagCAUCCGGaaGGuCCGCag -5'
18988 5' -59.2 NC_004684.1 + 64980 0.66 0.548515
Target:  5'- gACCGCGaCGcGGGUCUgcggcucgCCAgcGGCGUUg -3'
miRNA:   3'- -UGGCGCaGCaUCCGGAa-------GGU--CCGCAG- -5'
18988 5' -59.2 NC_004684.1 + 59857 0.66 0.527945
Target:  5'- cGCCGCcaCGgcGGCCaggucggUCCGGGCagGUCc -3'
miRNA:   3'- -UGGCGcaGCauCCGGa------AGGUCCG--CAG- -5'
18988 5' -59.2 NC_004684.1 + 16526 0.67 0.486744
Target:  5'- cGCCGCaGUCcugggGUGuGGCCUUCaucguuaugggccUGGGCGUCa -3'
miRNA:   3'- -UGGCG-CAG-----CAU-CCGGAAG-------------GUCCGCAG- -5'
18988 5' -59.2 NC_004684.1 + 60344 0.67 0.477901
Target:  5'- cACCGCG-CGUucGGCCagcggugCCAGGUcgGUCa -3'
miRNA:   3'- -UGGCGCaGCAu-CCGGaa-----GGUCCG--CAG- -5'
18988 5' -59.2 NC_004684.1 + 32081 0.67 0.477901
Target:  5'- cACCGCGUC-UGGGUgagCguuggCCAGGCGg- -3'
miRNA:   3'- -UGGCGCAGcAUCCG---Gaa---GGUCCGCag -5'
18988 5' -59.2 NC_004684.1 + 49214 0.68 0.458541
Target:  5'- gGCCa-GUCGgucGGuGCCgggCCGGGCGUCg -3'
miRNA:   3'- -UGGcgCAGCa--UC-CGGaa-GGUCCGCAG- -5'
18988 5' -59.2 NC_004684.1 + 24676 0.73 0.216418
Target:  5'- gGCgGUGagGUuccAGGCCUgccgaccauUCCAGGCGUCa -3'
miRNA:   3'- -UGgCGCagCA---UCCGGA---------AGGUCCGCAG- -5'
18988 5' -59.2 NC_004684.1 + 59518 0.73 0.216418
Target:  5'- -gCGCGUCGUAGGCCUgcgCaCAGGUc-- -3'
miRNA:   3'- ugGCGCAGCAUCCGGAa--G-GUCCGcag -5'
18988 5' -59.2 NC_004684.1 + 52722 0.72 0.239429
Target:  5'- cGCCaCGcUCGUAGGCgCUguccUCCAGGuCGUCg -3'
miRNA:   3'- -UGGcGC-AGCAUCCG-GA----AGGUCC-GCAG- -5'
18988 5' -59.2 NC_004684.1 + 44133 0.69 0.368617
Target:  5'- cCCGCGUCGUuGaGCa--CCAGGCGcUCg -3'
miRNA:   3'- uGGCGCAGCAuC-CGgaaGGUCCGC-AG- -5'
18988 5' -59.2 NC_004684.1 + 2754 0.69 0.385615
Target:  5'- uCgGCGUCGaguGGaCgUUCCAGGUGUCc -3'
miRNA:   3'- uGgCGCAGCau-CC-GgAAGGUCCGCAG- -5'
18988 5' -59.2 NC_004684.1 + 51591 0.69 0.394306
Target:  5'- gACCGgGUgGUccaAGGUC-UCCAGGUGUUc -3'
miRNA:   3'- -UGGCgCAgCA---UCCGGaAGGUCCGCAG- -5'
18988 5' -59.2 NC_004684.1 + 50650 0.68 0.430309
Target:  5'- cACCGcCGUCGgGGGUgCggaCCAGGCGUg -3'
miRNA:   3'- -UGGC-GCAGCaUCCG-Gaa-GGUCCGCAg -5'
18988 5' -59.2 NC_004684.1 + 12842 0.66 0.579809
Target:  5'- aGCCGCG-CG--GGCCaagaGGGCGUCg -3'
miRNA:   3'- -UGGCGCaGCauCCGGaaggUCCGCAG- -5'
18988 5' -59.2 NC_004684.1 + 38065 0.73 0.210968
Target:  5'- cACCGCGUCGgcaacgauGGCC-UCCAGGaCGa- -3'
miRNA:   3'- -UGGCGCAGCau------CCGGaAGGUCC-GCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.