miRNA display CGI


Results 21 - 40 of 43 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18988 5' -59.2 NC_004684.1 + 37429 0.67 0.487731
Target:  5'- cGCCG-GUCGguugcggcGGGCUUUCCAGGUa-- -3'
miRNA:   3'- -UGGCgCAGCa-------UCCGGAAGGUCCGcag -5'
18988 5' -59.2 NC_004684.1 + 6094 0.67 0.487731
Target:  5'- cACCGCGUCcgaugGUGcGCCUgagCCAGGCc-- -3'
miRNA:   3'- -UGGCGCAG-----CAUcCGGAa--GGUCCGcag -5'
18988 5' -59.2 NC_004684.1 + 10058 0.67 0.496659
Target:  5'- -gCGCGUCGaAGGCCU-CCAugaccguGGCGa- -3'
miRNA:   3'- ugGCGCAGCaUCCGGAaGGU-------CCGCag -5'
18988 5' -59.2 NC_004684.1 + 15165 0.67 0.50767
Target:  5'- cACCGCGcCGauaAGGCCgucgaccucaUCC-GGCGUCc -3'
miRNA:   3'- -UGGCGCaGCa--UCCGGa---------AGGuCCGCAG- -5'
18988 5' -59.2 NC_004684.1 + 13046 0.67 0.50767
Target:  5'- cGCCGCGUCGgcgGGaGCa--CCGGGgGUg -3'
miRNA:   3'- -UGGCGCAGCa--UC-CGgaaGGUCCgCAg -5'
18988 5' -59.2 NC_004684.1 + 53196 0.67 0.517768
Target:  5'- cCCGCGUgaUGU-GGCCUUgCAGGCc-- -3'
miRNA:   3'- uGGCGCA--GCAuCCGGAAgGUCCGcag -5'
18988 5' -59.2 NC_004684.1 + 41861 0.67 0.517768
Target:  5'- gGCCGCGUcCGUAcgcccacuGGCUcaaCCGGGUGUa -3'
miRNA:   3'- -UGGCGCA-GCAU--------CCGGaa-GGUCCGCAg -5'
18988 5' -59.2 NC_004684.1 + 57287 0.66 0.538197
Target:  5'- cAUCGCGcCGcc-GCCUUCCAGGCc-- -3'
miRNA:   3'- -UGGCGCaGCaucCGGAAGGUCCGcag -5'
18988 5' -59.2 NC_004684.1 + 26357 0.68 0.449019
Target:  5'- cACCGaaUCcuugAGGCCUUCCAGGCc-- -3'
miRNA:   3'- -UGGCgcAGca--UCCGGAAGGUCCGcag -5'
18988 5' -59.2 NC_004684.1 + 30777 0.68 0.449019
Target:  5'- cACCgGCGUgagCGUGucGCCUUCCAGGUGg- -3'
miRNA:   3'- -UGG-CGCA---GCAUc-CGGAAGGUCCGCag -5'
18988 5' -59.2 NC_004684.1 + 6852 0.68 0.443358
Target:  5'- uGCCGuCGagcacuUCGUgcacccgacggcuccGGGCCagCCAGGUGUCg -3'
miRNA:   3'- -UGGC-GC------AGCA---------------UCCGGaaGGUCCGCAG- -5'
18988 5' -59.2 NC_004684.1 + 38065 0.73 0.210968
Target:  5'- cACCGCGUCGgcaacgauGGCC-UCCAGGaCGa- -3'
miRNA:   3'- -UGGCGCAGCau------CCGGaAGGUCC-GCag -5'
18988 5' -59.2 NC_004684.1 + 66444 0.73 0.221987
Target:  5'- cCCGCGUCGcccuGGCCgcCCGccccGGCGUCa -3'
miRNA:   3'- uGGCGCAGCau--CCGGaaGGU----CCGCAG- -5'
18988 5' -59.2 NC_004684.1 + 6919 0.72 0.23883
Target:  5'- uUCGCGcCGUAGGCCagcuccUCCAggccgacGGCGUCg -3'
miRNA:   3'- uGGCGCaGCAUCCGGa-----AGGU-------CCGCAG- -5'
18988 5' -59.2 NC_004684.1 + 24508 0.72 0.26445
Target:  5'- --gGCGUCGacuucggccUGGGCCUUCUuGGUGUCg -3'
miRNA:   3'- uggCGCAGC---------AUCCGGAAGGuCCGCAG- -5'
18988 5' -59.2 NC_004684.1 + 22371 0.71 0.271028
Target:  5'- cGCCGCG-CGggccuuGGCCgccgCCAGGCGg- -3'
miRNA:   3'- -UGGCGCaGCau----CCGGaa--GGUCCGCag -5'
18988 5' -59.2 NC_004684.1 + 9981 0.71 0.277737
Target:  5'- gACCacuCGUCGgcGGCCUgcUCCugcgcGGCGUCg -3'
miRNA:   3'- -UGGc--GCAGCauCCGGA--AGGu----CCGCAG- -5'
18988 5' -59.2 NC_004684.1 + 16362 0.69 0.394306
Target:  5'- cGCCGCGUCGggcccGGCgCgaacaCCGGGCGa- -3'
miRNA:   3'- -UGGCGCAGCau---CCG-Gaa---GGUCCGCag -5'
18988 5' -59.2 NC_004684.1 + 31303 0.68 0.421127
Target:  5'- cACCgGCGUCGgccAGGUcguCUUCCAGGCc-- -3'
miRNA:   3'- -UGG-CGCAGCa--UCCG---GAAGGUCCGcag -5'
18988 5' -59.2 NC_004684.1 + 2376 0.68 0.421127
Target:  5'- cACCGCGUCGU-GGC---CCAGGCu-- -3'
miRNA:   3'- -UGGCGCAGCAuCCGgaaGGUCCGcag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.