miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18988 5' -59.2 NC_004684.1 + 26357 0.68 0.449019
Target:  5'- cACCGaaUCcuugAGGCCUUCCAGGCc-- -3'
miRNA:   3'- -UGGCgcAGca--UCCGGAAGGUCCGcag -5'
18988 5' -59.2 NC_004684.1 + 30777 0.68 0.449019
Target:  5'- cACCgGCGUgagCGUGucGCCUUCCAGGUGg- -3'
miRNA:   3'- -UGG-CGCA---GCAUc-CGGAAGGUCCGCag -5'
18988 5' -59.2 NC_004684.1 + 31303 0.68 0.421127
Target:  5'- cACCgGCGUCGgccAGGUcguCUUCCAGGCc-- -3'
miRNA:   3'- -UGG-CGCAGCa--UCCG---GAAGGUCCGcag -5'
18988 5' -59.2 NC_004684.1 + 32081 0.67 0.477901
Target:  5'- cACCGCGUC-UGGGUgagCguuggCCAGGCGg- -3'
miRNA:   3'- -UGGCGCAGcAUCCG---Gaa---GGUCCGCag -5'
18988 5' -59.2 NC_004684.1 + 37429 0.67 0.487731
Target:  5'- cGCCG-GUCGguugcggcGGGCUUUCCAGGUa-- -3'
miRNA:   3'- -UGGCgCAGCa-------UCCGGAAGGUCCGcag -5'
18988 5' -59.2 NC_004684.1 + 37745 0.66 0.558894
Target:  5'- cACCGgGUCGau-GCCUgaCCGGGCGg- -3'
miRNA:   3'- -UGGCgCAGCaucCGGAa-GGUCCGCag -5'
18988 5' -59.2 NC_004684.1 + 38065 0.73 0.210968
Target:  5'- cACCGCGUCGgcaacgauGGCC-UCCAGGaCGa- -3'
miRNA:   3'- -UGGCGCAGCau------CCGGaAGGUCC-GCag -5'
18988 5' -59.2 NC_004684.1 + 41861 0.67 0.517768
Target:  5'- gGCCGCGUcCGUAcgcccacuGGCUcaaCCGGGUGUa -3'
miRNA:   3'- -UGGCGCA-GCAU--------CCGGaa-GGUCCGCAg -5'
18988 5' -59.2 NC_004684.1 + 44133 0.69 0.368617
Target:  5'- cCCGCGUCGUuGaGCa--CCAGGCGcUCg -3'
miRNA:   3'- uGGCGCAGCAuC-CGgaaGGUCCGC-AG- -5'
18988 5' -59.2 NC_004684.1 + 47261 0.66 0.579809
Target:  5'- gGCUGCG-CGgaacAGGCCcUCCAGGUugGUg -3'
miRNA:   3'- -UGGCGCaGCa---UCCGGaAGGUCCG--CAg -5'
18988 5' -59.2 NC_004684.1 + 48659 0.73 0.200424
Target:  5'- cACCGCGcCGgagAGGCCUUcaCCGGGCa-- -3'
miRNA:   3'- -UGGCGCaGCa--UCCGGAA--GGUCCGcag -5'
18988 5' -59.2 NC_004684.1 + 49214 0.68 0.458541
Target:  5'- gGCCa-GUCGgucGGuGCCgggCCGGGCGUCg -3'
miRNA:   3'- -UGGcgCAGCa--UC-CGGaa-GGUCCGCAG- -5'
18988 5' -59.2 NC_004684.1 + 50650 0.68 0.430309
Target:  5'- cACCGcCGUCGgGGGUgCggaCCAGGCGUg -3'
miRNA:   3'- -UGGC-GCAGCaUCCG-Gaa-GGUCCGCAg -5'
18988 5' -59.2 NC_004684.1 + 50967 0.66 0.569328
Target:  5'- cGCCagcaCGUCGUAGGCCgaccCCuGGCa-- -3'
miRNA:   3'- -UGGc---GCAGCAUCCGGaa--GGuCCGcag -5'
18988 5' -59.2 NC_004684.1 + 51591 0.69 0.394306
Target:  5'- gACCGgGUgGUccaAGGUC-UCCAGGUGUUc -3'
miRNA:   3'- -UGGCgCAgCA---UCCGGaAGGUCCGCAG- -5'
18988 5' -59.2 NC_004684.1 + 52722 0.72 0.239429
Target:  5'- cGCCaCGcUCGUAGGCgCUguccUCCAGGuCGUCg -3'
miRNA:   3'- -UGGcGC-AGCAUCCG-GA----AGGUCC-GCAG- -5'
18988 5' -59.2 NC_004684.1 + 53196 0.67 0.517768
Target:  5'- cCCGCGUgaUGU-GGCCUUgCAGGCc-- -3'
miRNA:   3'- uGGCGCA--GCAuCCGGAAgGUCCGcag -5'
18988 5' -59.2 NC_004684.1 + 57287 0.66 0.538197
Target:  5'- cAUCGCGcCGcc-GCCUUCCAGGCc-- -3'
miRNA:   3'- -UGGCGCaGCaucCGGAAGGUCCGcag -5'
18988 5' -59.2 NC_004684.1 + 59518 0.73 0.216418
Target:  5'- -gCGCGUCGUAGGCCUgcgCaCAGGUc-- -3'
miRNA:   3'- ugGCGCAGCAUCCGGAa--G-GUCCGcag -5'
18988 5' -59.2 NC_004684.1 + 59857 0.66 0.527945
Target:  5'- cGCCGCcaCGgcGGCCaggucggUCCGGGCagGUCc -3'
miRNA:   3'- -UGGCGcaGCauCCGGa------AGGUCCG--CAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.