miRNA display CGI


Results 1 - 20 of 43 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18988 5' -59.2 NC_004684.1 + 715 0.67 0.474971
Target:  5'- cGCCGUGcUCGUcGGCCaggucgUCCAGGUcaggcggcccggagGUCa -3'
miRNA:   3'- -UGGCGC-AGCAuCCGGa-----AGGUCCG--------------CAG- -5'
18988 5' -59.2 NC_004684.1 + 2376 0.68 0.421127
Target:  5'- cACCGCGUCGU-GGC---CCAGGCu-- -3'
miRNA:   3'- -UGGCGCAGCAuCCGgaaGGUCCGcag -5'
18988 5' -59.2 NC_004684.1 + 2754 0.69 0.385615
Target:  5'- uCgGCGUCGaguGGaCgUUCCAGGUGUCc -3'
miRNA:   3'- uGgCGCAGCau-CC-GgAAGGUCCGCAG- -5'
18988 5' -59.2 NC_004684.1 + 3521 0.66 0.569328
Target:  5'- cGCCGaCGg-GUGGGCCgaCCuGGCGg- -3'
miRNA:   3'- -UGGC-GCagCAUCCGGaaGGuCCGCag -5'
18988 5' -59.2 NC_004684.1 + 6094 0.67 0.487731
Target:  5'- cACCGCGUCcgaugGUGcGCCUgagCCAGGCc-- -3'
miRNA:   3'- -UGGCGCAG-----CAUcCGGAa--GGUCCGcag -5'
18988 5' -59.2 NC_004684.1 + 6852 0.68 0.443358
Target:  5'- uGCCGuCGagcacuUCGUgcacccgacggcuccGGGCCagCCAGGUGUCg -3'
miRNA:   3'- -UGGC-GC------AGCA---------------UCCGGaaGGUCCGCAG- -5'
18988 5' -59.2 NC_004684.1 + 6919 0.72 0.23883
Target:  5'- uUCGCGcCGUAGGCCagcuccUCCAggccgacGGCGUCg -3'
miRNA:   3'- uGGCGCaGCAUCCGGa-----AGGU-------CCGCAG- -5'
18988 5' -59.2 NC_004684.1 + 8086 1.07 0.000681
Target:  5'- uACCGCGUCGUAGGCCUUCCAGGCGUCc -3'
miRNA:   3'- -UGGCGCAGCAUCCGGAAGGUCCGCAG- -5'
18988 5' -59.2 NC_004684.1 + 9981 0.71 0.277737
Target:  5'- gACCacuCGUCGgcGGCCUgcUCCugcgcGGCGUCg -3'
miRNA:   3'- -UGGc--GCAGCauCCGGA--AGGu----CCGCAG- -5'
18988 5' -59.2 NC_004684.1 + 10058 0.67 0.496659
Target:  5'- -gCGCGUCGaAGGCCU-CCAugaccguGGCGa- -3'
miRNA:   3'- ugGCGCAGCaUCCGGAaGGU-------CCGCag -5'
18988 5' -59.2 NC_004684.1 + 12842 0.66 0.579809
Target:  5'- aGCCGCG-CG--GGCCaagaGGGCGUCg -3'
miRNA:   3'- -UGGCGCaGCauCCGGaaggUCCGCAG- -5'
18988 5' -59.2 NC_004684.1 + 13046 0.67 0.50767
Target:  5'- cGCCGCGUCGgcgGGaGCa--CCGGGgGUg -3'
miRNA:   3'- -UGGCGCAGCa--UC-CGgaaGGUCCgCAg -5'
18988 5' -59.2 NC_004684.1 + 13863 0.66 0.579809
Target:  5'- uCCGCGcCGaccuGGCCaUUCaggaGGGUGUCg -3'
miRNA:   3'- uGGCGCaGCau--CCGG-AAGg---UCCGCAG- -5'
18988 5' -59.2 NC_004684.1 + 15165 0.67 0.50767
Target:  5'- cACCGCGcCGauaAGGCCgucgaccucaUCC-GGCGUCc -3'
miRNA:   3'- -UGGCGCaGCa--UCCGGa---------AGGuCCGCAG- -5'
18988 5' -59.2 NC_004684.1 + 16362 0.69 0.394306
Target:  5'- cGCCGCGUCGggcccGGCgCgaacaCCGGGCGa- -3'
miRNA:   3'- -UGGCGCAGCau---CCG-Gaa---GGUCCGCag -5'
18988 5' -59.2 NC_004684.1 + 16526 0.67 0.486744
Target:  5'- cGCCGCaGUCcugggGUGuGGCCUUCaucguuaugggccUGGGCGUCa -3'
miRNA:   3'- -UGGCG-CAG-----CAU-CCGGAAG-------------GUCCGCAG- -5'
18988 5' -59.2 NC_004684.1 + 22371 0.71 0.271028
Target:  5'- cGCCGCG-CGggccuuGGCCgccgCCAGGCGg- -3'
miRNA:   3'- -UGGCGCaGCau----CCGGaa--GGUCCGCag -5'
18988 5' -59.2 NC_004684.1 + 24508 0.72 0.26445
Target:  5'- --gGCGUCGacuucggccUGGGCCUUCUuGGUGUCg -3'
miRNA:   3'- uggCGCAGC---------AUCCGGAAGGuCCGCAG- -5'
18988 5' -59.2 NC_004684.1 + 24676 0.73 0.216418
Target:  5'- gGCgGUGagGUuccAGGCCUgccgaccauUCCAGGCGUCa -3'
miRNA:   3'- -UGgCGCagCA---UCCGGA---------AGGUCCGCAG- -5'
18988 5' -59.2 NC_004684.1 + 25637 0.67 0.477901
Target:  5'- cACCGCGcCG-AGGCuCUUgagcaccgaCCcGGCGUCg -3'
miRNA:   3'- -UGGCGCaGCaUCCG-GAA---------GGuCCGCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.