miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18989 5' -58.7 NC_004684.1 + 67010 0.68 0.404241
Target:  5'- uUCGCCGAgguuguggCcGCCaAGGCCGcGCCGAa -3'
miRNA:   3'- cAGCGGCUa-------GaCGG-UCCGGC-UGGUUa -5'
18989 5' -58.7 NC_004684.1 + 66748 0.66 0.520763
Target:  5'- -cCGCCGG--UGaCCGGGCCGccGCCGAg -3'
miRNA:   3'- caGCGGCUagAC-GGUCCGGC--UGGUUa -5'
18989 5' -58.7 NC_004684.1 + 64198 0.66 0.55201
Target:  5'- cGUUGCCGGUgUGCCGGaUCGACa--- -3'
miRNA:   3'- -CAGCGGCUAgACGGUCcGGCUGguua -5'
18989 5' -58.7 NC_004684.1 + 63669 0.68 0.45088
Target:  5'- -cCGCCGcgCcGCgCAGGCCGAUgGAc -3'
miRNA:   3'- caGCGGCuaGaCG-GUCCGGCUGgUUa -5'
18989 5' -58.7 NC_004684.1 + 63339 0.67 0.460558
Target:  5'- gGUCGUgGAcaagCUGCuCGGGCCGACg--- -3'
miRNA:   3'- -CAGCGgCUa---GACG-GUCCGGCUGguua -5'
18989 5' -58.7 NC_004684.1 + 62901 0.67 0.500319
Target:  5'- cGUUGCCacggCggGCCAGGCCcuGGCCGGUg -3'
miRNA:   3'- -CAGCGGcua-Ga-CGGUCCGG--CUGGUUA- -5'
18989 5' -58.7 NC_004684.1 + 62803 0.69 0.386457
Target:  5'- gGUUGCCGggCagGCgggggagcuuuCAGGCCGACCGGg -3'
miRNA:   3'- -CAGCGGCuaGa-CG-----------GUCCGGCUGGUUa -5'
18989 5' -58.7 NC_004684.1 + 61256 0.7 0.328407
Target:  5'- -cCGCCGAcCUgGCCGgguGGCUGACCGAg -3'
miRNA:   3'- caGCGGCUaGA-CGGU---CCGGCUGGUUa -5'
18989 5' -58.7 NC_004684.1 + 60286 0.7 0.328407
Target:  5'- -aCGCCGAUCagcacauccUGCCAGGCCGcguCUGGg -3'
miRNA:   3'- caGCGGCUAG---------ACGGUCCGGCu--GGUUa -5'
18989 5' -58.7 NC_004684.1 + 57898 0.71 0.297517
Target:  5'- gGUgGCCGggCUgaaggugGCCGGGCUGACCGc- -3'
miRNA:   3'- -CAgCGGCuaGA-------CGGUCCGGCUGGUua -5'
18989 5' -58.7 NC_004684.1 + 57557 0.67 0.510498
Target:  5'- -cCGCCGAgCUGCgCcGGuuGGCCGAc -3'
miRNA:   3'- caGCGGCUaGACG-GuCCggCUGGUUa -5'
18989 5' -58.7 NC_004684.1 + 57353 0.66 0.573155
Target:  5'- --gGCCGAgCUGUgCGGGCCGACgGu- -3'
miRNA:   3'- cagCGGCUaGACG-GUCCGGCUGgUua -5'
18989 5' -58.7 NC_004684.1 + 51803 0.66 0.562555
Target:  5'- aGUC-CCGGUCcacgGCCAGGCCGcGCg--- -3'
miRNA:   3'- -CAGcGGCUAGa---CGGUCCGGC-UGguua -5'
18989 5' -58.7 NC_004684.1 + 51170 0.69 0.377761
Target:  5'- uGUgGCCGAUgcGCCGGGCCaugGACCGc- -3'
miRNA:   3'- -CAgCGGCUAgaCGGUCCGG---CUGGUua -5'
18989 5' -58.7 NC_004684.1 + 50602 0.66 0.560442
Target:  5'- gGUCGgCGGUCggcgggucaucgGCguGGCCGACaCAGa -3'
miRNA:   3'- -CAGCgGCUAGa-----------CGguCCGGCUG-GUUa -5'
18989 5' -58.7 NC_004684.1 + 50375 0.68 0.422533
Target:  5'- aGUCGCCG-UCggGCCuGGcGCUGGCCAGc -3'
miRNA:   3'- -CAGCGGCuAGa-CGG-UC-CGGCUGGUUa -5'
18989 5' -58.7 NC_004684.1 + 49432 0.66 0.573155
Target:  5'- --gGCCuGAUCccGUCAGcGCCGACCAu- -3'
miRNA:   3'- cagCGG-CUAGa-CGGUC-CGGCUGGUua -5'
18989 5' -58.7 NC_004684.1 + 49218 0.68 0.431863
Target:  5'- --aGUCGGUCggUGCCGGGCCGGgCGu- -3'
miRNA:   3'- cagCGGCUAG--ACGGUCCGGCUgGUua -5'
18989 5' -58.7 NC_004684.1 + 49143 0.67 0.510498
Target:  5'- cGUCGCCGGUCUcgcacaCCGGGCaguaCGGCgCAGUc -3'
miRNA:   3'- -CAGCGGCUAGAc-----GGUCCG----GCUG-GUUA- -5'
18989 5' -58.7 NC_004684.1 + 49103 0.73 0.226457
Target:  5'- gGUgGCCGAUCUGUucagcgggguCGGGCCcGGCCAGc -3'
miRNA:   3'- -CAgCGGCUAGACG----------GUCCGG-CUGGUUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.