miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18989 5' -58.7 NC_004684.1 + 465 0.67 0.480238
Target:  5'- -cCGUCGGUCUcgGCCAGGUCGcgcaugGCCAu- -3'
miRNA:   3'- caGCGGCUAGA--CGGUCCGGC------UGGUua -5'
18989 5' -58.7 NC_004684.1 + 718 0.74 0.169861
Target:  5'- gGUCGCCGugcucGUCgGCCAGGUCGuCCAGg -3'
miRNA:   3'- -CAGCGGC-----UAGaCGGUCCGGCuGGUUa -5'
18989 5' -58.7 NC_004684.1 + 814 0.67 0.514594
Target:  5'- uGUCGUCGGgguaguuggagcGCCAGGCCGuCCAc- -3'
miRNA:   3'- -CAGCGGCUaga---------CGGUCCGGCuGGUua -5'
18989 5' -58.7 NC_004684.1 + 1331 0.66 0.520763
Target:  5'- --gGCCGGg--GCCGGGCgacCGACCAGg -3'
miRNA:   3'- cagCGGCUagaCGGUCCG---GCUGGUUa -5'
18989 5' -58.7 NC_004684.1 + 3519 0.67 0.460558
Target:  5'- aUCGCCGA-CgGgUGGGCCGACCu-- -3'
miRNA:   3'- cAGCGGCUaGaCgGUCCGGCUGGuua -5'
18989 5' -58.7 NC_004684.1 + 4989 0.68 0.45088
Target:  5'- -cCGCCGAg--GCCGGuGgCGACCAGg -3'
miRNA:   3'- caGCGGCUagaCGGUC-CgGCUGGUUa -5'
18989 5' -58.7 NC_004684.1 + 5962 0.67 0.500319
Target:  5'- gGUCagGCUGGUgCUGCCcGGCCuGCCAGUc -3'
miRNA:   3'- -CAG--CGGCUA-GACGGuCCGGcUGGUUA- -5'
18989 5' -58.7 NC_004684.1 + 6784 0.72 0.232327
Target:  5'- -gCGCCGA-CggugGCCAGGUCGACCu-- -3'
miRNA:   3'- caGCGGCUaGa---CGGUCCGGCUGGuua -5'
18989 5' -58.7 NC_004684.1 + 9001 1.06 0.000833
Target:  5'- cGUCGCCGAUCUGCCAGGCCGACCAAUg -3'
miRNA:   3'- -CAGCGGCUAGACGGUCCGGCUGGUUA- -5'
18989 5' -58.7 NC_004684.1 + 9238 0.67 0.510498
Target:  5'- uGUCGUCG----GCCAGGCCGAgCAu- -3'
miRNA:   3'- -CAGCGGCuagaCGGUCCGGCUgGUua -5'
18989 5' -58.7 NC_004684.1 + 9900 0.69 0.360768
Target:  5'- -cCGCCGA-CgagugGuCCGGGCUGACCGAg -3'
miRNA:   3'- caGCGGCUaGa----C-GGUCCGGCUGGUUa -5'
18989 5' -58.7 NC_004684.1 + 9929 0.7 0.336292
Target:  5'- -gCGgUGAUUgugGCCGGGCUGACCAu- -3'
miRNA:   3'- caGCgGCUAGa--CGGUCCGGCUGGUua -5'
18989 5' -58.7 NC_004684.1 + 10001 0.71 0.283985
Target:  5'- cGUUGCCGGaaCUGCCGGaccugccgcgcGCCGACCGGg -3'
miRNA:   3'- -CAGCGGCUa-GACGGUC-----------CGGCUGGUUa -5'
18989 5' -58.7 NC_004684.1 + 12042 0.68 0.441314
Target:  5'- -gCGCCGcAggUGCCAGGCuggCGACCAu- -3'
miRNA:   3'- caGCGGC-UagACGGUCCG---GCUGGUua -5'
18989 5' -58.7 NC_004684.1 + 12851 0.66 0.562555
Target:  5'- gGUCGCgGAg--GCCgAGGCCG-CCAc- -3'
miRNA:   3'- -CAGCGgCUagaCGG-UCCGGCuGGUua -5'
18989 5' -58.7 NC_004684.1 + 13852 0.67 0.470346
Target:  5'- gGUCGCCugGAgc-GCCAGGCCGuugagcACCGAg -3'
miRNA:   3'- -CAGCGG--CUagaCGGUCCGGC------UGGUUa -5'
18989 5' -58.7 NC_004684.1 + 18332 0.66 0.541525
Target:  5'- -aCGCCGGUgCcGCCcccGGaGCCGACCGGc -3'
miRNA:   3'- caGCGGCUA-GaCGG---UC-CGGCUGGUUa -5'
18989 5' -58.7 NC_004684.1 + 18374 0.67 0.500319
Target:  5'- cUUGCCGGUCggUGCCAGcaGgCGGCCGGg -3'
miRNA:   3'- cAGCGGCUAG--ACGGUC--CgGCUGGUUa -5'
18989 5' -58.7 NC_004684.1 + 18507 0.71 0.277061
Target:  5'- -cCGCCGGUgCgcccGCCGGGCCG-CCGAa -3'
miRNA:   3'- caGCGGCUA-Ga---CGGUCCGGCuGGUUa -5'
18989 5' -58.7 NC_004684.1 + 19015 0.68 0.413325
Target:  5'- gGUCGCUGGUCU-CCGGGUuggcaccggCGGCCGGg -3'
miRNA:   3'- -CAGCGGCUAGAcGGUCCG---------GCUGGUUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.