miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18989 5' -58.7 NC_004684.1 + 20247 0.67 0.500319
Target:  5'- -aCGCCGcaaggGCCGGGCCGucACCGGc -3'
miRNA:   3'- caGCGGCuaga-CGGUCCGGC--UGGUUa -5'
18989 5' -58.7 NC_004684.1 + 21062 0.66 0.562555
Target:  5'- -gUGCCGGUgCUGaCCGGGCaccugGGCCGGUc -3'
miRNA:   3'- caGCGGCUA-GAC-GGUCCGg----CUGGUUA- -5'
18989 5' -58.7 NC_004684.1 + 22372 0.66 0.573155
Target:  5'- -cCGCCGcgCggGCCuuGGCCGccGCCAGg -3'
miRNA:   3'- caGCGGCuaGa-CGGu-CCGGC--UGGUUa -5'
18989 5' -58.7 NC_004684.1 + 22833 0.68 0.413325
Target:  5'- -cCGgCGGUgcagGCCGGGCUGGCCAAg -3'
miRNA:   3'- caGCgGCUAga--CGGUCCGGCUGGUUa -5'
18989 5' -58.7 NC_004684.1 + 22905 0.73 0.215094
Target:  5'- -cCGCCGGgaaCUGCC-GGUCGACCAGc -3'
miRNA:   3'- caGCGGCUa--GACGGuCCGGCUGGUUa -5'
18989 5' -58.7 NC_004684.1 + 22934 0.67 0.510498
Target:  5'- cUUGCUGGUCUugGCCAGcCCGGCCu-- -3'
miRNA:   3'- cAGCGGCUAGA--CGGUCcGGCUGGuua -5'
18989 5' -58.7 NC_004684.1 + 22991 0.7 0.32066
Target:  5'- -cCGCUGAUCaacgGCCuGGGCCGACUGGc -3'
miRNA:   3'- caGCGGCUAGa---CGG-UCCGGCUGGUUa -5'
18989 5' -58.7 NC_004684.1 + 23154 0.69 0.386458
Target:  5'- cGUCGaaCCGGUUggccagcuugGCCAGGCCGucACCAAg -3'
miRNA:   3'- -CAGC--GGCUAGa---------CGGUCCGGC--UGGUUa -5'
18989 5' -58.7 NC_004684.1 + 23443 0.68 0.413325
Target:  5'- gGUgGCCGAUCUGCU-GGCCu-CCAu- -3'
miRNA:   3'- -CAgCGGCUAGACGGuCCGGcuGGUua -5'
18989 5' -58.7 NC_004684.1 + 23553 0.67 0.470346
Target:  5'- -cCGCCGucacgCUGUCGGGCauggaGGCCAGc -3'
miRNA:   3'- caGCGGCua---GACGGUCCGg----CUGGUUa -5'
18989 5' -58.7 NC_004684.1 + 23773 0.67 0.470346
Target:  5'- --gGCCacgcUCUGguCCGGGCCGACCAGg -3'
miRNA:   3'- cagCGGcu--AGAC--GGUCCGGCUGGUUa -5'
18989 5' -58.7 NC_004684.1 + 24539 0.67 0.489227
Target:  5'- -aCGgCGGUgUGCCGGGCCGcgauagcgucccgGCCAu- -3'
miRNA:   3'- caGCgGCUAgACGGUCCGGC-------------UGGUua -5'
18989 5' -58.7 NC_004684.1 + 25189 0.66 0.55201
Target:  5'- gGUCGuuGAgcgacaugcCUGCCgggAGGUCGGCCAc- -3'
miRNA:   3'- -CAGCggCUa--------GACGG---UCCGGCUGGUua -5'
18989 5' -58.7 NC_004684.1 + 25969 0.72 0.257096
Target:  5'- -cCGCUGAcguUCUGCCcGGCCuGGCCGAg -3'
miRNA:   3'- caGCGGCU---AGACGGuCCGG-CUGGUUa -5'
18989 5' -58.7 NC_004684.1 + 26461 0.67 0.500319
Target:  5'- -cCGCCGAcgUUGCCGGuGCCGuugcCCGAc -3'
miRNA:   3'- caGCGGCUa-GACGGUC-CGGCu---GGUUa -5'
18989 5' -58.7 NC_004684.1 + 27264 0.67 0.480238
Target:  5'- aUCGCCGug--GCCAGGUCGccGCCGu- -3'
miRNA:   3'- cAGCGGCuagaCGGUCCGGC--UGGUua -5'
18989 5' -58.7 NC_004684.1 + 27999 0.66 0.55201
Target:  5'- uGUCGCCcagGAaCUcGCgCAGGCCgGGCCAAc -3'
miRNA:   3'- -CAGCGG---CUaGA-CG-GUCCGG-CUGGUUa -5'
18989 5' -58.7 NC_004684.1 + 28167 0.66 0.527996
Target:  5'- gGUCGCgCGG-CgGCCcggccacaccgccgGGGCCGACCAc- -3'
miRNA:   3'- -CAGCG-GCUaGaCGG--------------UCCGGCUGGUua -5'
18989 5' -58.7 NC_004684.1 + 31396 0.66 0.531107
Target:  5'- --gGCUGGUCUGCCcGGUC-ACCGAg -3'
miRNA:   3'- cagCGGCUAGACGGuCCGGcUGGUUa -5'
18989 5' -58.7 NC_004684.1 + 35895 0.72 0.250708
Target:  5'- uUCGgCGGUCgcgGCCAGGUgGACCGc- -3'
miRNA:   3'- cAGCgGCUAGa--CGGUCCGgCUGGUua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.