Results 21 - 40 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18989 | 5' | -58.7 | NC_004684.1 | + | 57898 | 0.71 | 0.297517 |
Target: 5'- gGUgGCCGggCUgaaggugGCCGGGCUGACCGc- -3' miRNA: 3'- -CAgCGGCuaGA-------CGGUCCGGCUGGUua -5' |
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18989 | 5' | -58.7 | NC_004684.1 | + | 22991 | 0.7 | 0.32066 |
Target: 5'- -cCGCUGAUCaacgGCCuGGGCCGACUGGc -3' miRNA: 3'- caGCGGCUAGa---CGG-UCCGGCUGGUUa -5' |
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18989 | 5' | -58.7 | NC_004684.1 | + | 9929 | 0.7 | 0.336292 |
Target: 5'- -gCGgUGAUUgugGCCGGGCUGACCAu- -3' miRNA: 3'- caGCgGCUAGa--CGGUCCGGCUGGUua -5' |
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18989 | 5' | -58.7 | NC_004684.1 | + | 41340 | 0.7 | 0.336292 |
Target: 5'- -cCGCCGA-CgGCCGGGCCaaGGCCAc- -3' miRNA: 3'- caGCGGCUaGaCGGUCCGG--CUGGUua -5' |
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18989 | 5' | -58.7 | NC_004684.1 | + | 22833 | 0.68 | 0.413325 |
Target: 5'- -cCGgCGGUgcagGCCGGGCUGGCCAAg -3' miRNA: 3'- caGCgGCUAga--CGGUCCGGCUGGUUa -5' |
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18989 | 5' | -58.7 | NC_004684.1 | + | 19015 | 0.68 | 0.413325 |
Target: 5'- gGUCGCUGGUCU-CCGGGUuggcaccggCGGCCGGg -3' miRNA: 3'- -CAGCGGCUAGAcGGUCCG---------GCUGGUUa -5' |
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18989 | 5' | -58.7 | NC_004684.1 | + | 62803 | 0.69 | 0.386457 |
Target: 5'- gGUUGCCGggCagGCgggggagcuuuCAGGCCGACCGGg -3' miRNA: 3'- -CAGCGGCuaGa-CG-----------GUCCGGCUGGUUa -5' |
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18989 | 5' | -58.7 | NC_004684.1 | + | 51170 | 0.69 | 0.377761 |
Target: 5'- uGUgGCCGAUgcGCCGGGCCaugGACCGc- -3' miRNA: 3'- -CAgCGGCUAgaCGGUCCGG---CUGGUua -5' |
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18989 | 5' | -58.7 | NC_004684.1 | + | 9900 | 0.69 | 0.360768 |
Target: 5'- -cCGCCGA-CgagugGuCCGGGCUGACCGAg -3' miRNA: 3'- caGCGGCUaGa----C-GGUCCGGCUGGUUa -5' |
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18989 | 5' | -58.7 | NC_004684.1 | + | 61256 | 0.7 | 0.328407 |
Target: 5'- -cCGCCGAcCUgGCCGgguGGCUGACCGAg -3' miRNA: 3'- caGCGGCUaGA-CGGU---CCGGCUGGUUa -5' |
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18989 | 5' | -58.7 | NC_004684.1 | + | 60286 | 0.7 | 0.328407 |
Target: 5'- -aCGCCGAUCagcacauccUGCCAGGCCGcguCUGGg -3' miRNA: 3'- caGCGGCUAG---------ACGGUCCGGCu--GGUUa -5' |
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18989 | 5' | -58.7 | NC_004684.1 | + | 40222 | 0.71 | 0.291046 |
Target: 5'- aUCGCCGAggUCggUGCCgAGGCCG-CCAGc -3' miRNA: 3'- cAGCGGCU--AG--ACGG-UCCGGCuGGUUa -5' |
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18989 | 5' | -58.7 | NC_004684.1 | + | 18507 | 0.71 | 0.277061 |
Target: 5'- -cCGCCGGUgCgcccGCCGGGCCG-CCGAa -3' miRNA: 3'- caGCGGCUA-Ga---CGGUCCGGCuGGUUa -5' |
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18989 | 5' | -58.7 | NC_004684.1 | + | 25969 | 0.72 | 0.257096 |
Target: 5'- -cCGCUGAcguUCUGCCcGGCCuGGCCGAg -3' miRNA: 3'- caGCGGCU---AGACGGuCCGG-CUGGUUa -5' |
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18989 | 5' | -58.7 | NC_004684.1 | + | 6784 | 0.72 | 0.232327 |
Target: 5'- -gCGCCGA-CggugGCCAGGUCGACCu-- -3' miRNA: 3'- caGCGGCUaGa---CGGUCCGGCUGGuua -5' |
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18989 | 5' | -58.7 | NC_004684.1 | + | 49103 | 0.73 | 0.226457 |
Target: 5'- gGUgGCCGAUCUGUucagcgggguCGGGCCcGGCCAGc -3' miRNA: 3'- -CAgCGGCUAGACG----------GUCCGG-CUGGUUa -5' |
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18989 | 5' | -58.7 | NC_004684.1 | + | 22905 | 0.73 | 0.215094 |
Target: 5'- -cCGCCGGgaaCUGCC-GGUCGACCAGc -3' miRNA: 3'- caGCGGCUa--GACGGuCCGGCUGGUUa -5' |
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18989 | 5' | -58.7 | NC_004684.1 | + | 718 | 0.74 | 0.169861 |
Target: 5'- gGUCGCCGugcucGUCgGCCAGGUCGuCCAGg -3' miRNA: 3'- -CAGCGGC-----UAGaCGGUCCGGCuGGUUa -5' |
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18989 | 5' | -58.7 | NC_004684.1 | + | 45331 | 0.77 | 0.122852 |
Target: 5'- -gCGCUGG-CUGCCGGGCCuGACCAGc -3' miRNA: 3'- caGCGGCUaGACGGUCCGG-CUGGUUa -5' |
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18989 | 5' | -58.7 | NC_004684.1 | + | 22372 | 0.66 | 0.573155 |
Target: 5'- -cCGCCGcgCggGCCuuGGCCGccGCCAGg -3' miRNA: 3'- caGCGGCuaGa-CGGu-CCGGC--UGGUUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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