Results 21 - 40 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18989 | 5' | -58.7 | NC_004684.1 | + | 9238 | 0.67 | 0.510498 |
Target: 5'- uGUCGUCG----GCCAGGCCGAgCAu- -3' miRNA: 3'- -CAGCGGCuagaCGGUCCGGCUgGUua -5' |
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18989 | 5' | -58.7 | NC_004684.1 | + | 26461 | 0.67 | 0.500319 |
Target: 5'- -cCGCCGAcgUUGCCGGuGCCGuugcCCGAc -3' miRNA: 3'- caGCGGCUa-GACGGUC-CGGCu---GGUUa -5' |
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18989 | 5' | -58.7 | NC_004684.1 | + | 18374 | 0.67 | 0.500319 |
Target: 5'- cUUGCCGGUCggUGCCAGcaGgCGGCCGGg -3' miRNA: 3'- cAGCGGCUAG--ACGGUC--CgGCUGGUUa -5' |
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18989 | 5' | -58.7 | NC_004684.1 | + | 465 | 0.67 | 0.480238 |
Target: 5'- -cCGUCGGUCUcgGCCAGGUCGcgcaugGCCAu- -3' miRNA: 3'- caGCGGCUAGA--CGGUCCGGC------UGGUua -5' |
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18989 | 5' | -58.7 | NC_004684.1 | + | 27264 | 0.67 | 0.480238 |
Target: 5'- aUCGCCGug--GCCAGGUCGccGCCGu- -3' miRNA: 3'- cAGCGGCuagaCGGUCCGGC--UGGUua -5' |
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18989 | 5' | -58.7 | NC_004684.1 | + | 63339 | 0.67 | 0.460558 |
Target: 5'- gGUCGUgGAcaagCUGCuCGGGCCGACg--- -3' miRNA: 3'- -CAGCGgCUa---GACG-GUCCGGCUGguua -5' |
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18989 | 5' | -58.7 | NC_004684.1 | + | 23773 | 0.67 | 0.470346 |
Target: 5'- --gGCCacgcUCUGguCCGGGCCGACCAGg -3' miRNA: 3'- cagCGGcu--AGAC--GGUCCGGCUGGUUa -5' |
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18989 | 5' | -58.7 | NC_004684.1 | + | 814 | 0.67 | 0.514594 |
Target: 5'- uGUCGUCGGgguaguuggagcGCCAGGCCGuCCAc- -3' miRNA: 3'- -CAGCGGCUaga---------CGGUCCGGCuGGUua -5' |
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18989 | 5' | -58.7 | NC_004684.1 | + | 23553 | 0.67 | 0.470346 |
Target: 5'- -cCGCCGucacgCUGUCGGGCauggaGGCCAGc -3' miRNA: 3'- caGCGGCua---GACGGUCCGg----CUGGUUa -5' |
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18989 | 5' | -58.7 | NC_004684.1 | + | 3519 | 0.67 | 0.460558 |
Target: 5'- aUCGCCGA-CgGgUGGGCCGACCu-- -3' miRNA: 3'- cAGCGGCUaGaCgGUCCGGCUGGuua -5' |
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18989 | 5' | -58.7 | NC_004684.1 | + | 24539 | 0.67 | 0.489227 |
Target: 5'- -aCGgCGGUgUGCCGGGCCGcgauagcgucccgGCCAu- -3' miRNA: 3'- caGCgGCUAgACGGUCCGGC-------------UGGUua -5' |
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18989 | 5' | -58.7 | NC_004684.1 | + | 62901 | 0.67 | 0.500319 |
Target: 5'- cGUUGCCacggCggGCCAGGCCcuGGCCGGUg -3' miRNA: 3'- -CAGCGGcua-Ga-CGGUCCGG--CUGGUUA- -5' |
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18989 | 5' | -58.7 | NC_004684.1 | + | 36922 | 0.67 | 0.510498 |
Target: 5'- aUCGcCCGGUCgagGCCGGGUgGACa--- -3' miRNA: 3'- cAGC-GGCUAGa--CGGUCCGgCUGguua -5' |
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18989 | 5' | -58.7 | NC_004684.1 | + | 57557 | 0.67 | 0.510498 |
Target: 5'- -cCGCCGAgCUGCgCcGGuuGGCCGAc -3' miRNA: 3'- caGCGGCUaGACG-GuCCggCUGGUUa -5' |
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18989 | 5' | -58.7 | NC_004684.1 | + | 41648 | 0.67 | 0.514594 |
Target: 5'- aUCGCCuccggugcggcguacGAag-GCCGGGCCGACCu-- -3' miRNA: 3'- cAGCGG---------------CUagaCGGUCCGGCUGGuua -5' |
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18989 | 5' | -58.7 | NC_004684.1 | + | 20247 | 0.67 | 0.500319 |
Target: 5'- -aCGCCGcaaggGCCGGGCCGucACCGGc -3' miRNA: 3'- caGCGGCuaga-CGGUCCGGC--UGGUUa -5' |
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18989 | 5' | -58.7 | NC_004684.1 | + | 49143 | 0.67 | 0.510498 |
Target: 5'- cGUCGCCGGUCUcgcacaCCGGGCaguaCGGCgCAGUc -3' miRNA: 3'- -CAGCGGCUAGAc-----GGUCCG----GCUG-GUUA- -5' |
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18989 | 5' | -58.7 | NC_004684.1 | + | 67010 | 0.68 | 0.404241 |
Target: 5'- uUCGCCGAgguuguggCcGCCaAGGCCGcGCCGAa -3' miRNA: 3'- cAGCGGCUa-------GaCGG-UCCGGC-UGGUUa -5' |
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18989 | 5' | -58.7 | NC_004684.1 | + | 46909 | 0.68 | 0.413325 |
Target: 5'- -cCGCCGcAUCccCCAGGaCCGGCCAAc -3' miRNA: 3'- caGCGGC-UAGacGGUCC-GGCUGGUUa -5' |
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18989 | 5' | -58.7 | NC_004684.1 | + | 23443 | 0.68 | 0.413325 |
Target: 5'- gGUgGCCGAUCUGCU-GGCCu-CCAu- -3' miRNA: 3'- -CAgCGGCUAGACGGuCCGGcuGGUua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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