miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18989 5' -58.7 NC_004684.1 + 51170 0.69 0.377761
Target:  5'- uGUgGCCGAUgcGCCGGGCCaugGACCGc- -3'
miRNA:   3'- -CAgCGGCUAgaCGGUCCGG---CUGGUua -5'
18989 5' -58.7 NC_004684.1 + 62803 0.69 0.386457
Target:  5'- gGUUGCCGggCagGCgggggagcuuuCAGGCCGACCGGg -3'
miRNA:   3'- -CAGCGGCuaGa-CG-----------GUCCGGCUGGUUa -5'
18989 5' -58.7 NC_004684.1 + 23154 0.69 0.386458
Target:  5'- cGUCGaaCCGGUUggccagcuugGCCAGGCCGucACCAAg -3'
miRNA:   3'- -CAGC--GGCUAGa---------CGGUCCGGC--UGGUUa -5'
18989 5' -58.7 NC_004684.1 + 67010 0.68 0.404241
Target:  5'- uUCGCCGAgguuguggCcGCCaAGGCCGcGCCGAa -3'
miRNA:   3'- cAGCGGCUa-------GaCGG-UCCGGC-UGGUUa -5'
18989 5' -58.7 NC_004684.1 + 41774 0.68 0.412411
Target:  5'- cGUCGCCGcgCuggguguUGCCgAGGUCGGCCc-- -3'
miRNA:   3'- -CAGCGGCuaG-------ACGG-UCCGGCUGGuua -5'
18989 5' -58.7 NC_004684.1 + 46909 0.68 0.413325
Target:  5'- -cCGCCGcAUCccCCAGGaCCGGCCAAc -3'
miRNA:   3'- caGCGGC-UAGacGGUCC-GGCUGGUUa -5'
18989 5' -58.7 NC_004684.1 + 19015 0.68 0.413325
Target:  5'- gGUCGCUGGUCU-CCGGGUuggcaccggCGGCCGGg -3'
miRNA:   3'- -CAGCGGCUAGAcGGUCCG---------GCUGGUUa -5'
18989 5' -58.7 NC_004684.1 + 22833 0.68 0.413325
Target:  5'- -cCGgCGGUgcagGCCGGGCUGGCCAAg -3'
miRNA:   3'- caGCgGCUAga--CGGUCCGGCUGGUUa -5'
18989 5' -58.7 NC_004684.1 + 23443 0.68 0.413325
Target:  5'- gGUgGCCGAUCUGCU-GGCCu-CCAu- -3'
miRNA:   3'- -CAgCGGCUAGACGGuCCGGcuGGUua -5'
18989 5' -58.7 NC_004684.1 + 50375 0.68 0.422533
Target:  5'- aGUCGCCG-UCggGCCuGGcGCUGGCCAGc -3'
miRNA:   3'- -CAGCGGCuAGa-CGG-UC-CGGCUGGUUa -5'
18989 5' -58.7 NC_004684.1 + 49218 0.68 0.431863
Target:  5'- --aGUCGGUCggUGCCGGGCCGGgCGu- -3'
miRNA:   3'- cagCGGCUAG--ACGGUCCGGCUgGUua -5'
18989 5' -58.7 NC_004684.1 + 12042 0.68 0.441314
Target:  5'- -gCGCCGcAggUGCCAGGCuggCGACCAu- -3'
miRNA:   3'- caGCGGC-UagACGGUCCG---GCUGGUua -5'
18989 5' -58.7 NC_004684.1 + 63669 0.68 0.45088
Target:  5'- -cCGCCGcgCcGCgCAGGCCGAUgGAc -3'
miRNA:   3'- caGCGGCuaGaCG-GUCCGGCUGgUUa -5'
18989 5' -58.7 NC_004684.1 + 4989 0.68 0.45088
Target:  5'- -cCGCCGAg--GCCGGuGgCGACCAGg -3'
miRNA:   3'- caGCGGCUagaCGGUC-CgGCUGGUUa -5'
18989 5' -58.7 NC_004684.1 + 63339 0.67 0.460558
Target:  5'- gGUCGUgGAcaagCUGCuCGGGCCGACg--- -3'
miRNA:   3'- -CAGCGgCUa---GACG-GUCCGGCUGguua -5'
18989 5' -58.7 NC_004684.1 + 3519 0.67 0.460558
Target:  5'- aUCGCCGA-CgGgUGGGCCGACCu-- -3'
miRNA:   3'- cAGCGGCUaGaCgGUCCGGCUGGuua -5'
18989 5' -58.7 NC_004684.1 + 13852 0.67 0.470346
Target:  5'- gGUCGCCugGAgc-GCCAGGCCGuugagcACCGAg -3'
miRNA:   3'- -CAGCGG--CUagaCGGUCCGGC------UGGUUa -5'
18989 5' -58.7 NC_004684.1 + 23553 0.67 0.470346
Target:  5'- -cCGCCGucacgCUGUCGGGCauggaGGCCAGc -3'
miRNA:   3'- caGCGGCua---GACGGUCCGg----CUGGUUa -5'
18989 5' -58.7 NC_004684.1 + 23773 0.67 0.470346
Target:  5'- --gGCCacgcUCUGguCCGGGCCGACCAGg -3'
miRNA:   3'- cagCGGcu--AGAC--GGUCCGGCUGGUUa -5'
18989 5' -58.7 NC_004684.1 + 27264 0.67 0.480238
Target:  5'- aUCGCCGug--GCCAGGUCGccGCCGu- -3'
miRNA:   3'- cAGCGGCuagaCGGUCCGGC--UGGUua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.