miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18989 5' -58.7 NC_004684.1 + 57557 0.67 0.510498
Target:  5'- -cCGCCGAgCUGCgCcGGuuGGCCGAc -3'
miRNA:   3'- caGCGGCUaGACG-GuCCggCUGGUUa -5'
18989 5' -58.7 NC_004684.1 + 49143 0.67 0.510498
Target:  5'- cGUCGCCGGUCUcgcacaCCGGGCaguaCGGCgCAGUc -3'
miRNA:   3'- -CAGCGGCUAGAc-----GGUCCG----GCUG-GUUA- -5'
18989 5' -58.7 NC_004684.1 + 36922 0.67 0.510498
Target:  5'- aUCGcCCGGUCgagGCCGGGUgGACa--- -3'
miRNA:   3'- cAGC-GGCUAGa--CGGUCCGgCUGguua -5'
18989 5' -58.7 NC_004684.1 + 22934 0.67 0.510498
Target:  5'- cUUGCUGGUCUugGCCAGcCCGGCCu-- -3'
miRNA:   3'- cAGCGGCUAGA--CGGUCcGGCUGGuua -5'
18989 5' -58.7 NC_004684.1 + 26461 0.67 0.500319
Target:  5'- -cCGCCGAcgUUGCCGGuGCCGuugcCCGAc -3'
miRNA:   3'- caGCGGCUa-GACGGUC-CGGCu---GGUUa -5'
18989 5' -58.7 NC_004684.1 + 5962 0.67 0.500319
Target:  5'- gGUCagGCUGGUgCUGCCcGGCCuGCCAGUc -3'
miRNA:   3'- -CAG--CGGCUA-GACGGuCCGGcUGGUUA- -5'
18989 5' -58.7 NC_004684.1 + 18374 0.67 0.500319
Target:  5'- cUUGCCGGUCggUGCCAGcaGgCGGCCGGg -3'
miRNA:   3'- cAGCGGCUAG--ACGGUC--CgGCUGGUUa -5'
18989 5' -58.7 NC_004684.1 + 62901 0.67 0.500319
Target:  5'- cGUUGCCacggCggGCCAGGCCcuGGCCGGUg -3'
miRNA:   3'- -CAGCGGcua-Ga-CGGUCCGG--CUGGUUA- -5'
18989 5' -58.7 NC_004684.1 + 20247 0.67 0.500319
Target:  5'- -aCGCCGcaaggGCCGGGCCGucACCGGc -3'
miRNA:   3'- caGCGGCuaga-CGGUCCGGC--UGGUUa -5'
18989 5' -58.7 NC_004684.1 + 24539 0.67 0.489227
Target:  5'- -aCGgCGGUgUGCCGGGCCGcgauagcgucccgGCCAu- -3'
miRNA:   3'- caGCgGCUAgACGGUCCGGC-------------UGGUua -5'
18989 5' -58.7 NC_004684.1 + 465 0.67 0.480238
Target:  5'- -cCGUCGGUCUcgGCCAGGUCGcgcaugGCCAu- -3'
miRNA:   3'- caGCGGCUAGA--CGGUCCGGC------UGGUua -5'
18989 5' -58.7 NC_004684.1 + 27264 0.67 0.480238
Target:  5'- aUCGCCGug--GCCAGGUCGccGCCGu- -3'
miRNA:   3'- cAGCGGCuagaCGGUCCGGC--UGGUua -5'
18989 5' -58.7 NC_004684.1 + 23553 0.67 0.470346
Target:  5'- -cCGCCGucacgCUGUCGGGCauggaGGCCAGc -3'
miRNA:   3'- caGCGGCua---GACGGUCCGg----CUGGUUa -5'
18989 5' -58.7 NC_004684.1 + 13852 0.67 0.470346
Target:  5'- gGUCGCCugGAgc-GCCAGGCCGuugagcACCGAg -3'
miRNA:   3'- -CAGCGG--CUagaCGGUCCGGC------UGGUUa -5'
18989 5' -58.7 NC_004684.1 + 23773 0.67 0.470346
Target:  5'- --gGCCacgcUCUGguCCGGGCCGACCAGg -3'
miRNA:   3'- cagCGGcu--AGAC--GGUCCGGCUGGUUa -5'
18989 5' -58.7 NC_004684.1 + 63339 0.67 0.460558
Target:  5'- gGUCGUgGAcaagCUGCuCGGGCCGACg--- -3'
miRNA:   3'- -CAGCGgCUa---GACG-GUCCGGCUGguua -5'
18989 5' -58.7 NC_004684.1 + 3519 0.67 0.460558
Target:  5'- aUCGCCGA-CgGgUGGGCCGACCu-- -3'
miRNA:   3'- cAGCGGCUaGaCgGUCCGGCUGGuua -5'
18989 5' -58.7 NC_004684.1 + 63669 0.68 0.45088
Target:  5'- -cCGCCGcgCcGCgCAGGCCGAUgGAc -3'
miRNA:   3'- caGCGGCuaGaCG-GUCCGGCUGgUUa -5'
18989 5' -58.7 NC_004684.1 + 4989 0.68 0.45088
Target:  5'- -cCGCCGAg--GCCGGuGgCGACCAGg -3'
miRNA:   3'- caGCGGCUagaCGGUC-CgGCUGGUUa -5'
18989 5' -58.7 NC_004684.1 + 12042 0.68 0.441314
Target:  5'- -gCGCCGcAggUGCCAGGCuggCGACCAu- -3'
miRNA:   3'- caGCGGC-UagACGGUCCG---GCUGGUua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.