Results 1 - 20 of 71 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18989 | 5' | -58.7 | NC_004684.1 | + | 57353 | 0.66 | 0.573155 |
Target: 5'- --gGCCGAgCUGUgCGGGCCGACgGu- -3' miRNA: 3'- cagCGGCUaGACG-GUCCGGCUGgUua -5' |
|||||||
18989 | 5' | -58.7 | NC_004684.1 | + | 22372 | 0.66 | 0.573155 |
Target: 5'- -cCGCCGcgCggGCCuuGGCCGccGCCAGg -3' miRNA: 3'- caGCGGCuaGa-CGGu-CCGGC--UGGUUa -5' |
|||||||
18989 | 5' | -58.7 | NC_004684.1 | + | 36365 | 0.66 | 0.573155 |
Target: 5'- -cCGCCucguUCUugGCCAGGCCG-CCGGa -3' miRNA: 3'- caGCGGcu--AGA--CGGUCCGGCuGGUUa -5' |
|||||||
18989 | 5' | -58.7 | NC_004684.1 | + | 49432 | 0.66 | 0.573155 |
Target: 5'- --gGCCuGAUCccGUCAGcGCCGACCAu- -3' miRNA: 3'- cagCGG-CUAGa-CGGUC-CGGCUGGUua -5' |
|||||||
18989 | 5' | -58.7 | NC_004684.1 | + | 42856 | 0.66 | 0.562556 |
Target: 5'- -cCGCUcaaaccgggGAUCgcaccgGCCAGGCCG-CCAAc -3' miRNA: 3'- caGCGG---------CUAGa-----CGGUCCGGCuGGUUa -5' |
|||||||
18989 | 5' | -58.7 | NC_004684.1 | + | 12851 | 0.66 | 0.562555 |
Target: 5'- gGUCGCgGAg--GCCgAGGCCG-CCAc- -3' miRNA: 3'- -CAGCGgCUagaCGG-UCCGGCuGGUua -5' |
|||||||
18989 | 5' | -58.7 | NC_004684.1 | + | 21062 | 0.66 | 0.562555 |
Target: 5'- -gUGCCGGUgCUGaCCGGGCaccugGGCCGGUc -3' miRNA: 3'- caGCGGCUA-GAC-GGUCCGg----CUGGUUA- -5' |
|||||||
18989 | 5' | -58.7 | NC_004684.1 | + | 51803 | 0.66 | 0.562555 |
Target: 5'- aGUC-CCGGUCcacgGCCAGGCCGcGCg--- -3' miRNA: 3'- -CAGcGGCUAGa---CGGUCCGGC-UGguua -5' |
|||||||
18989 | 5' | -58.7 | NC_004684.1 | + | 50602 | 0.66 | 0.560442 |
Target: 5'- gGUCGgCGGUCggcgggucaucgGCguGGCCGACaCAGa -3' miRNA: 3'- -CAGCgGCUAGa-----------CGguCCGGCUG-GUUa -5' |
|||||||
18989 | 5' | -58.7 | NC_004684.1 | + | 27999 | 0.66 | 0.55201 |
Target: 5'- uGUCGCCcagGAaCUcGCgCAGGCCgGGCCAAc -3' miRNA: 3'- -CAGCGG---CUaGA-CG-GUCCGG-CUGGUUa -5' |
|||||||
18989 | 5' | -58.7 | NC_004684.1 | + | 25189 | 0.66 | 0.55201 |
Target: 5'- gGUCGuuGAgcgacaugcCUGCCgggAGGUCGGCCAc- -3' miRNA: 3'- -CAGCggCUa--------GACGG---UCCGGCUGGUua -5' |
|||||||
18989 | 5' | -58.7 | NC_004684.1 | + | 64198 | 0.66 | 0.55201 |
Target: 5'- cGUUGCCGGUgUGCCGGaUCGACa--- -3' miRNA: 3'- -CAGCGGCUAgACGGUCcGGCUGguua -5' |
|||||||
18989 | 5' | -58.7 | NC_004684.1 | + | 18332 | 0.66 | 0.541525 |
Target: 5'- -aCGCCGGUgCcGCCcccGGaGCCGACCGGc -3' miRNA: 3'- caGCGGCUA-GaCGG---UC-CGGCUGGUUa -5' |
|||||||
18989 | 5' | -58.7 | NC_004684.1 | + | 31396 | 0.66 | 0.531107 |
Target: 5'- --gGCUGGUCUGCCcGGUC-ACCGAg -3' miRNA: 3'- cagCGGCUAGACGGuCCGGcUGGUUa -5' |
|||||||
18989 | 5' | -58.7 | NC_004684.1 | + | 28167 | 0.66 | 0.527996 |
Target: 5'- gGUCGCgCGG-CgGCCcggccacaccgccgGGGCCGACCAc- -3' miRNA: 3'- -CAGCG-GCUaGaCGG--------------UCCGGCUGGUua -5' |
|||||||
18989 | 5' | -58.7 | NC_004684.1 | + | 66748 | 0.66 | 0.520763 |
Target: 5'- -cCGCCGG--UGaCCGGGCCGccGCCGAg -3' miRNA: 3'- caGCGGCUagAC-GGUCCGGC--UGGUUa -5' |
|||||||
18989 | 5' | -58.7 | NC_004684.1 | + | 1331 | 0.66 | 0.520763 |
Target: 5'- --gGCCGGg--GCCGGGCgacCGACCAGg -3' miRNA: 3'- cagCGGCUagaCGGUCCG---GCUGGUUa -5' |
|||||||
18989 | 5' | -58.7 | NC_004684.1 | + | 814 | 0.67 | 0.514594 |
Target: 5'- uGUCGUCGGgguaguuggagcGCCAGGCCGuCCAc- -3' miRNA: 3'- -CAGCGGCUaga---------CGGUCCGGCuGGUua -5' |
|||||||
18989 | 5' | -58.7 | NC_004684.1 | + | 41648 | 0.67 | 0.514594 |
Target: 5'- aUCGCCuccggugcggcguacGAag-GCCGGGCCGACCu-- -3' miRNA: 3'- cAGCGG---------------CUagaCGGUCCGGCUGGuua -5' |
|||||||
18989 | 5' | -58.7 | NC_004684.1 | + | 22934 | 0.67 | 0.510498 |
Target: 5'- cUUGCUGGUCUugGCCAGcCCGGCCu-- -3' miRNA: 3'- cAGCGGCUAGA--CGGUCcGGCUGGuua -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home