miRNA display CGI


Results 1 - 20 of 71 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18989 5' -58.7 NC_004684.1 + 49143 0.67 0.510498
Target:  5'- cGUCGCCGGUCUcgcacaCCGGGCaguaCGGCgCAGUc -3'
miRNA:   3'- -CAGCGGCUAGAc-----GGUCCG----GCUG-GUUA- -5'
18989 5' -58.7 NC_004684.1 + 22833 0.68 0.413325
Target:  5'- -cCGgCGGUgcagGCCGGGCUGGCCAAg -3'
miRNA:   3'- caGCgGCUAga--CGGUCCGGCUGGUUa -5'
18989 5' -58.7 NC_004684.1 + 23443 0.68 0.413325
Target:  5'- gGUgGCCGAUCUGCU-GGCCu-CCAu- -3'
miRNA:   3'- -CAgCGGCUAGACGGuCCGGcuGGUua -5'
18989 5' -58.7 NC_004684.1 + 46909 0.68 0.413325
Target:  5'- -cCGCCGcAUCccCCAGGaCCGGCCAAc -3'
miRNA:   3'- caGCGGC-UAGacGGUCC-GGCUGGUUa -5'
18989 5' -58.7 NC_004684.1 + 49218 0.68 0.431863
Target:  5'- --aGUCGGUCggUGCCGGGCCGGgCGu- -3'
miRNA:   3'- cagCGGCUAG--ACGGUCCGGCUgGUua -5'
18989 5' -58.7 NC_004684.1 + 3519 0.67 0.460558
Target:  5'- aUCGCCGA-CgGgUGGGCCGACCu-- -3'
miRNA:   3'- cAGCGGCUaGaCgGUCCGGCUGGuua -5'
18989 5' -58.7 NC_004684.1 + 24539 0.67 0.489227
Target:  5'- -aCGgCGGUgUGCCGGGCCGcgauagcgucccgGCCAu- -3'
miRNA:   3'- caGCgGCUAgACGGUCCGGC-------------UGGUua -5'
18989 5' -58.7 NC_004684.1 + 62901 0.67 0.500319
Target:  5'- cGUUGCCacggCggGCCAGGCCcuGGCCGGUg -3'
miRNA:   3'- -CAGCGGcua-Ga-CGGUCCGG--CUGGUUA- -5'
18989 5' -58.7 NC_004684.1 + 36922 0.67 0.510498
Target:  5'- aUCGcCCGGUCgagGCCGGGUgGACa--- -3'
miRNA:   3'- cAGC-GGCUAGa--CGGUCCGgCUGguua -5'
18989 5' -58.7 NC_004684.1 + 19015 0.68 0.413325
Target:  5'- gGUCGCUGGUCU-CCGGGUuggcaccggCGGCCGGg -3'
miRNA:   3'- -CAGCGGCUAGAcGGUCCG---------GCUGGUUa -5'
18989 5' -58.7 NC_004684.1 + 62803 0.69 0.386457
Target:  5'- gGUUGCCGggCagGCgggggagcuuuCAGGCCGACCGGg -3'
miRNA:   3'- -CAGCGGCuaGa-CG-----------GUCCGGCUGGUUa -5'
18989 5' -58.7 NC_004684.1 + 51170 0.69 0.377761
Target:  5'- uGUgGCCGAUgcGCCGGGCCaugGACCGc- -3'
miRNA:   3'- -CAgCGGCUAgaCGGUCCGG---CUGGUua -5'
18989 5' -58.7 NC_004684.1 + 43128 0.72 0.263617
Target:  5'- uGUCGCgCGAcUUGcCCAGGCgGGCCAGg -3'
miRNA:   3'- -CAGCG-GCUaGAC-GGUCCGgCUGGUUa -5'
18989 5' -58.7 NC_004684.1 + 48776 0.71 0.270271
Target:  5'- cUUGCCGAc--GCCGGGCgGGCCGAUg -3'
miRNA:   3'- cAGCGGCUagaCGGUCCGgCUGGUUA- -5'
18989 5' -58.7 NC_004684.1 + 10001 0.71 0.283985
Target:  5'- cGUUGCCGGaaCUGCCGGaccugccgcgcGCCGACCGGg -3'
miRNA:   3'- -CAGCGGCUa-GACGGUC-----------CGGCUGGUUa -5'
18989 5' -58.7 NC_004684.1 + 57898 0.71 0.297517
Target:  5'- gGUgGCCGggCUgaaggugGCCGGGCUGACCGc- -3'
miRNA:   3'- -CAgCGGCuaGA-------CGGUCCGGCUGGUua -5'
18989 5' -58.7 NC_004684.1 + 22991 0.7 0.32066
Target:  5'- -cCGCUGAUCaacgGCCuGGGCCGACUGGc -3'
miRNA:   3'- caGCGGCUAGa---CGG-UCCGGCUGGUUa -5'
18989 5' -58.7 NC_004684.1 + 9929 0.7 0.336292
Target:  5'- -gCGgUGAUUgugGCCGGGCUGACCAu- -3'
miRNA:   3'- caGCgGCUAGa--CGGUCCGGCUGGUua -5'
18989 5' -58.7 NC_004684.1 + 41340 0.7 0.336292
Target:  5'- -cCGCCGA-CgGCCGGGCCaaGGCCAc- -3'
miRNA:   3'- caGCGGCUaGaCGGUCCGG--CUGGUua -5'
18989 5' -58.7 NC_004684.1 + 9900 0.69 0.360768
Target:  5'- -cCGCCGA-CgagugGuCCGGGCUGACCGAg -3'
miRNA:   3'- caGCGGCUaGa----C-GGUCCGGCUGGUUa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.