miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18989 5' -58.7 NC_004684.1 + 9001 1.06 0.000833
Target:  5'- cGUCGCCGAUCUGCCAGGCCGACCAAUg -3'
miRNA:   3'- -CAGCGGCUAGACGGUCCGGCUGGUUA- -5'
18989 5' -58.7 NC_004684.1 + 4989 0.68 0.45088
Target:  5'- -cCGCCGAg--GCCGGuGgCGACCAGg -3'
miRNA:   3'- caGCGGCUagaCGGUC-CgGCUGGUUa -5'
18989 5' -58.7 NC_004684.1 + 23773 0.67 0.470346
Target:  5'- --gGCCacgcUCUGguCCGGGCCGACCAGg -3'
miRNA:   3'- cagCGGcu--AGAC--GGUCCGGCUGGUUa -5'
18989 5' -58.7 NC_004684.1 + 22372 0.66 0.573155
Target:  5'- -cCGCCGcgCggGCCuuGGCCGccGCCAGg -3'
miRNA:   3'- caGCGGCuaGa-CGGu-CCGGC--UGGUUa -5'
18989 5' -58.7 NC_004684.1 + 49103 0.73 0.226457
Target:  5'- gGUgGCCGAUCUGUucagcgggguCGGGCCcGGCCAGc -3'
miRNA:   3'- -CAgCGGCUAGACG----------GUCCGG-CUGGUUa -5'
18989 5' -58.7 NC_004684.1 + 6784 0.72 0.232327
Target:  5'- -gCGCCGA-CggugGCCAGGUCGACCu-- -3'
miRNA:   3'- caGCGGCUaGa---CGGUCCGGCUGGuua -5'
18989 5' -58.7 NC_004684.1 + 18507 0.71 0.277061
Target:  5'- -cCGCCGGUgCgcccGCCGGGCCG-CCGAa -3'
miRNA:   3'- caGCGGCUA-Ga---CGGUCCGGCuGGUUa -5'
18989 5' -58.7 NC_004684.1 + 40222 0.71 0.291046
Target:  5'- aUCGCCGAggUCggUGCCgAGGCCG-CCAGc -3'
miRNA:   3'- cAGCGGCU--AG--ACGG-UCCGGCuGGUUa -5'
18989 5' -58.7 NC_004684.1 + 23154 0.69 0.386458
Target:  5'- cGUCGaaCCGGUUggccagcuugGCCAGGCCGucACCAAg -3'
miRNA:   3'- -CAGC--GGCUAGa---------CGGUCCGGC--UGGUUa -5'
18989 5' -58.7 NC_004684.1 + 63669 0.68 0.45088
Target:  5'- -cCGCCGcgCcGCgCAGGCCGAUgGAc -3'
miRNA:   3'- caGCGGCuaGaCG-GUCCGGCUGgUUa -5'
18989 5' -58.7 NC_004684.1 + 41774 0.68 0.412411
Target:  5'- cGUCGCCGcgCuggguguUGCCgAGGUCGGCCc-- -3'
miRNA:   3'- -CAGCGGCuaG-------ACGG-UCCGGCUGGuua -5'
18989 5' -58.7 NC_004684.1 + 61256 0.7 0.328407
Target:  5'- -cCGCCGAcCUgGCCGgguGGCUGACCGAg -3'
miRNA:   3'- caGCGGCUaGA-CGGU---CCGGCUGGUUa -5'
18989 5' -58.7 NC_004684.1 + 45331 0.77 0.122852
Target:  5'- -gCGCUGG-CUGCCGGGCCuGACCAGc -3'
miRNA:   3'- caGCGGCUaGACGGUCCGG-CUGGUUa -5'
18989 5' -58.7 NC_004684.1 + 50375 0.68 0.422533
Target:  5'- aGUCGCCG-UCggGCCuGGcGCUGGCCAGc -3'
miRNA:   3'- -CAGCGGCuAGa-CGG-UC-CGGCUGGUUa -5'
18989 5' -58.7 NC_004684.1 + 718 0.74 0.169861
Target:  5'- gGUCGCCGugcucGUCgGCCAGGUCGuCCAGg -3'
miRNA:   3'- -CAGCGGC-----UAGaCGGUCCGGCuGGUUa -5'
18989 5' -58.7 NC_004684.1 + 60286 0.7 0.328407
Target:  5'- -aCGCCGAUCagcacauccUGCCAGGCCGcguCUGGg -3'
miRNA:   3'- caGCGGCUAG---------ACGGUCCGGCu--GGUUa -5'
18989 5' -58.7 NC_004684.1 + 12042 0.68 0.441314
Target:  5'- -gCGCCGcAggUGCCAGGCuggCGACCAu- -3'
miRNA:   3'- caGCGGC-UagACGGUCCG---GCUGGUua -5'
18989 5' -58.7 NC_004684.1 + 63339 0.67 0.460558
Target:  5'- gGUCGUgGAcaagCUGCuCGGGCCGACg--- -3'
miRNA:   3'- -CAGCGgCUa---GACG-GUCCGGCUGguua -5'
18989 5' -58.7 NC_004684.1 + 22905 0.73 0.215094
Target:  5'- -cCGCCGGgaaCUGCC-GGUCGACCAGc -3'
miRNA:   3'- caGCGGCUa--GACGGuCCGGCUGGUUa -5'
18989 5' -58.7 NC_004684.1 + 25969 0.72 0.257096
Target:  5'- -cCGCUGAcguUCUGCCcGGCCuGGCCGAg -3'
miRNA:   3'- caGCGGCU---AGACGGuCCGG-CUGGUUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.