Results 41 - 60 of 187 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18991 | 3' | -55.6 | NC_004684.1 | + | 57767 | 0.71 | 0.467406 |
Target: 5'- gCCugGCCGAUGGCcac-CUGCUGUgGg -3' miRNA: 3'- -GGugCGGCUACUGcauuGACGGCGgC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 28392 | 0.71 | 0.467406 |
Target: 5'- uCCucuCGCCGuacGCGUAcgUGCCGCCGg -3' miRNA: 3'- -GGu--GCGGCuacUGCAUugACGGCGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 28896 | 0.71 | 0.467406 |
Target: 5'- gCGCGCCG-UGGCG--ACcGCCGCUGa -3' miRNA: 3'- gGUGCGGCuACUGCauUGaCGGCGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 39993 | 0.71 | 0.477205 |
Target: 5'- aCCugGUCGGUGugGUGGCUuaCCaGCCu -3' miRNA: 3'- -GGugCGGCUACugCAUUGAc-GG-CGGc -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 43959 | 0.71 | 0.477205 |
Target: 5'- -uGCGCCGAacaUGGCGcacaUGCUGCCGa -3' miRNA: 3'- ggUGCGGCU---ACUGCauugACGGCGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 64773 | 0.71 | 0.487105 |
Target: 5'- aCAUGCuCGAcuggGACGUAcgcaaggugccGCUGCgCGCCGa -3' miRNA: 3'- gGUGCG-GCUa---CUGCAU-----------UGACG-GCGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 5262 | 0.71 | 0.487105 |
Target: 5'- cCCucuuCGgCGAUGGCGggaauguugAugUGCCGCCa -3' miRNA: 3'- -GGu---GCgGCUACUGCa--------UugACGGCGGc -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 44368 | 0.71 | 0.4971 |
Target: 5'- gCgACGCCG-UGcACGagugGugUGCCGCCGu -3' miRNA: 3'- -GgUGCGGCuAC-UGCa---UugACGGCGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 20416 | 0.71 | 0.4971 |
Target: 5'- gCgACGCCGAUcuCGaUGGCcGCCGCCGc -3' miRNA: 3'- -GgUGCGGCUAcuGC-AUUGaCGGCGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 18646 | 0.71 | 0.4971 |
Target: 5'- uCUGC-CCGGUgacGACGUGACcaucgUGCCGCCGc -3' miRNA: 3'- -GGUGcGGCUA---CUGCAUUG-----ACGGCGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 33892 | 0.71 | 0.507187 |
Target: 5'- gCCgACGCCGAaccgcuCGaUGACuUGCCGCCGa -3' miRNA: 3'- -GG-UGCGGCUacu---GC-AUUG-ACGGCGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 46509 | 0.71 | 0.507187 |
Target: 5'- gCCAgcuUGCCGAUGACGgugGACUuGCCugcaCCGg -3' miRNA: 3'- -GGU---GCGGCUACUGCa--UUGA-CGGc---GGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 17527 | 0.71 | 0.51736 |
Target: 5'- gCCACGCCGGacGACGUG---GUCGCCu -3' miRNA: 3'- -GGUGCGGCUa-CUGCAUugaCGGCGGc -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 32766 | 0.71 | 0.51736 |
Target: 5'- --uUGCCGAgGcCGUAGCcaUGCCGCCGc -3' miRNA: 3'- gguGCGGCUaCuGCAUUG--ACGGCGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 15145 | 0.71 | 0.51736 |
Target: 5'- uCCACGCCagc-GCGcAGCUgGCCGCCGc -3' miRNA: 3'- -GGUGCGGcuacUGCaUUGA-CGGCGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 14497 | 0.7 | 0.531735 |
Target: 5'- aCCACGCCGGucgccgguggcacggUGACGgugacccuggccUAACUGgCCGaCCGc -3' miRNA: 3'- -GGUGCGGCU---------------ACUGC------------AUUGAC-GGC-GGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 18249 | 0.7 | 0.531735 |
Target: 5'- aCGCGCCGAUuucGAUGUuGCcgagcgugaacuccuUGCCGCCc -3' miRNA: 3'- gGUGCGGCUA---CUGCAuUG---------------ACGGCGGc -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 25913 | 0.7 | 0.53794 |
Target: 5'- gC-CGCCGAUGcCGUucugGCCGCCa -3' miRNA: 3'- gGuGCGGCUACuGCAuugaCGGCGGc -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 38563 | 0.7 | 0.53794 |
Target: 5'- -gACGCCGGUGccugccuugucgGCGUGAUcgcGCCGUCGg -3' miRNA: 3'- ggUGCGGCUAC------------UGCAUUGa--CGGCGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 28570 | 0.7 | 0.53794 |
Target: 5'- cCCGCcaCCGGUGuGCGgcgGCUGCCuGCCGg -3' miRNA: 3'- -GGUGc-GGCUAC-UGCau-UGACGG-CGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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