miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18994 3' -58.2 NC_004684.1 + 42000 0.65 0.627792
Target:  5'- aCGGCcacgaugucgucgCGGUCGGCCAgcgcguucaugucGCGGGC-CUGCg -3'
miRNA:   3'- -GCCGa------------GUUAGCCGGU-------------CGCCUGuGGUG- -5'
18994 3' -58.2 NC_004684.1 + 39176 0.66 0.579872
Target:  5'- gGGUgCAAUgGGaugacuCCAGCGG-CACCGCc -3'
miRNA:   3'- gCCGaGUUAgCC------GGUCGCCuGUGGUG- -5'
18994 3' -58.2 NC_004684.1 + 29548 0.66 0.601111
Target:  5'- cCGGUguacCGAUUcuggGGCCgcugccuuacaaGGCGGugGCCGCa -3'
miRNA:   3'- -GCCGa---GUUAG----CCGG------------UCGCCugUGGUG- -5'
18994 3' -58.2 NC_004684.1 + 31950 0.66 0.579872
Target:  5'- uGGCcgCAAUCcgacGCCAGCcGAuCACCACc -3'
miRNA:   3'- gCCGa-GUUAGc---CGGUCGcCU-GUGGUG- -5'
18994 3' -58.2 NC_004684.1 + 10265 0.66 0.590475
Target:  5'- gGGCcaacCAAcUGGCCAGCG-ACGCCGg -3'
miRNA:   3'- gCCGa---GUUaGCCGGUCGCcUGUGGUg -5'
18994 3' -58.2 NC_004684.1 + 28058 0.66 0.611772
Target:  5'- cCGGU--GGUCGGCCccGGCGGuguggccgggcCGCCGCg -3'
miRNA:   3'- -GCCGagUUAGCCGG--UCGCCu----------GUGGUG- -5'
18994 3' -58.2 NC_004684.1 + 27314 0.66 0.611772
Target:  5'- -uGCUCGGUgCGGCCAGCuuuGACgACgGCg -3'
miRNA:   3'- gcCGAGUUA-GCCGGUCGc--CUG-UGgUG- -5'
18994 3' -58.2 NC_004684.1 + 53933 0.66 0.600046
Target:  5'- gGGgUCAccguGUCGGCCAGgcacagcUGaGCACCGCa -3'
miRNA:   3'- gCCgAGU----UAGCCGGUC-------GCcUGUGGUG- -5'
18994 3' -58.2 NC_004684.1 + 25801 0.66 0.590475
Target:  5'- aGGCUCAugauGUUGggcauGCCAGCuG-CGCCACg -3'
miRNA:   3'- gCCGAGU----UAGC-----CGGUCGcCuGUGGUG- -5'
18994 3' -58.2 NC_004684.1 + 19874 0.66 0.589413
Target:  5'- aGGCcCGccaucuuGUCGcccCCGGCGGGCACCGg -3'
miRNA:   3'- gCCGaGU-------UAGCc--GGUCGCCUGUGGUg -5'
18994 3' -58.2 NC_004684.1 + 47581 0.66 0.601111
Target:  5'- uCGGCUCAGugugcUCGGCgauguaGGCcGcACACCGCc -3'
miRNA:   3'- -GCCGAGUU-----AGCCGg-----UCGcC-UGUGGUG- -5'
18994 3' -58.2 NC_004684.1 + 985 0.66 0.590475
Target:  5'- gGGCguucUCGGCCAgcaccaagguGCGGAgauuucCACCGCg -3'
miRNA:   3'- gCCGaguuAGCCGGU----------CGCCU------GUGGUG- -5'
18994 3' -58.2 NC_004684.1 + 14615 0.66 0.590475
Target:  5'- uCGGC-CAGUUaGGCCAG-GGuCACCGu -3'
miRNA:   3'- -GCCGaGUUAG-CCGGUCgCCuGUGGUg -5'
18994 3' -58.2 NC_004684.1 + 53740 0.66 0.590475
Target:  5'- gGGUUCGA-CGGCCAG-GaACACCGa -3'
miRNA:   3'- gCCGAGUUaGCCGGUCgCcUGUGGUg -5'
18994 3' -58.2 NC_004684.1 + 6401 0.66 0.601111
Target:  5'- uCGGC-CAAguaCGGCCuGGUGGACcuggACCAg -3'
miRNA:   3'- -GCCGaGUUa--GCCGG-UCGCCUG----UGGUg -5'
18994 3' -58.2 NC_004684.1 + 36902 0.66 0.611772
Target:  5'- -aGCUCGGacUGGCCGGUGG-CAUCGCc -3'
miRNA:   3'- gcCGAGUUa-GCCGGUCGCCuGUGGUG- -5'
18994 3' -58.2 NC_004684.1 + 47621 0.66 0.62245
Target:  5'- uCGGUacUCGgcGUCGGCCuugucGUGGACgGCCAg -3'
miRNA:   3'- -GCCG--AGU--UAGCCGGu----CGCCUG-UGGUg -5'
18994 3' -58.2 NC_004684.1 + 28859 0.66 0.611772
Target:  5'- uGGCgucuccCGGUCGGCaUAGUGGgaACACCGa -3'
miRNA:   3'- gCCGa-----GUUAGCCG-GUCGCC--UGUGGUg -5'
18994 3' -58.2 NC_004684.1 + 32049 0.66 0.590475
Target:  5'- aGGUggUGAUCGGCUGGCgucGGAUugcgGCCACg -3'
miRNA:   3'- gCCGa-GUUAGCCGGUCG---CCUG----UGGUG- -5'
18994 3' -58.2 NC_004684.1 + 4175 0.66 0.601111
Target:  5'- uGGCcCGGUUGcGcCCGGCGGGCGCgGu -3'
miRNA:   3'- gCCGaGUUAGC-C-GGUCGCCUGUGgUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.