miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18994 3' -58.2 NC_004684.1 + 985 0.66 0.590475
Target:  5'- gGGCguucUCGGCCAgcaccaagguGCGGAgauuucCACCGCg -3'
miRNA:   3'- gCCGaguuAGCCGGU----------CGCCU------GUGGUG- -5'
18994 3' -58.2 NC_004684.1 + 2509 0.69 0.401946
Target:  5'- gCGGcCUCAAcgacgccCGGCaCuGCGGACGCUGCg -3'
miRNA:   3'- -GCC-GAGUUa------GCCG-GuCGCCUGUGGUG- -5'
18994 3' -58.2 NC_004684.1 + 3489 0.67 0.537941
Target:  5'- gGGCcgCAccgUGGCCGccaGGACGCCGCa -3'
miRNA:   3'- gCCGa-GUua-GCCGGUcg-CCUGUGGUG- -5'
18994 3' -58.2 NC_004684.1 + 4125 0.69 0.430227
Target:  5'- gCGGCUCcagguccaggagcgcAUCGGC--GCGGACACCGu -3'
miRNA:   3'- -GCCGAGu--------------UAGCCGguCGCCUGUGGUg -5'
18994 3' -58.2 NC_004684.1 + 4175 0.66 0.601111
Target:  5'- uGGCcCGGUUGcGcCCGGCGGGCGCgGu -3'
miRNA:   3'- gCCGaGUUAGC-C-GGUCGCCUGUGgUg -5'
18994 3' -58.2 NC_004684.1 + 4305 0.69 0.420057
Target:  5'- aGGCgcaugCAGUCguGGCUGGCGGugAUCAg -3'
miRNA:   3'- gCCGa----GUUAG--CCGGUCGCCugUGGUg -5'
18994 3' -58.2 NC_004684.1 + 4887 0.73 0.237621
Target:  5'- gCGGCUCAggCGGCC--UGGuCGCCACc -3'
miRNA:   3'- -GCCGAGUuaGCCGGucGCCuGUGGUG- -5'
18994 3' -58.2 NC_004684.1 + 5342 0.77 0.13305
Target:  5'- uGGcCUCGAacuguucuuuuguUCGGCCGcgcGCGGACACCAUg -3'
miRNA:   3'- gCC-GAGUU-------------AGCCGGU---CGCCUGUGGUG- -5'
18994 3' -58.2 NC_004684.1 + 6010 0.69 0.437713
Target:  5'- uGGC-CAGcgCGGCCAGCcGGucgugcgcgaucaGCGCCGCc -3'
miRNA:   3'- gCCGaGUUa-GCCGGUCG-CC-------------UGUGGUG- -5'
18994 3' -58.2 NC_004684.1 + 6159 0.69 0.448127
Target:  5'- aCGGCgg---CGGCCAGCGugcggcgguaGGCACCGg -3'
miRNA:   3'- -GCCGaguuaGCCGGUCGC----------CUGUGGUg -5'
18994 3' -58.2 NC_004684.1 + 6214 0.75 0.193498
Target:  5'- cCGGCgCGAucUCGGCCAGCuGGGCgGCCAg -3'
miRNA:   3'- -GCCGaGUU--AGCCGGUCG-CCUG-UGGUg -5'
18994 3' -58.2 NC_004684.1 + 6401 0.66 0.601111
Target:  5'- uCGGC-CAAguaCGGCCuGGUGGACcuggACCAg -3'
miRNA:   3'- -GCCGaGUUa--GCCGG-UCGCCUG----UGGUg -5'
18994 3' -58.2 NC_004684.1 + 6795 0.68 0.467407
Target:  5'- uCGGCUUGcUCGcGCCGaCGGugGCCAg -3'
miRNA:   3'- -GCCGAGUuAGC-CGGUcGCCugUGGUg -5'
18994 3' -58.2 NC_004684.1 + 7801 0.71 0.304253
Target:  5'- uGGCUCA--CGGCCAGCGc-CACgGCg -3'
miRNA:   3'- gCCGAGUuaGCCGGUCGCcuGUGgUG- -5'
18994 3' -58.2 NC_004684.1 + 8070 0.68 0.507187
Target:  5'- gCGGCUCAuu--GCCAGCGccaucgaccccGACACCGg -3'
miRNA:   3'- -GCCGAGUuagcCGGUCGC-----------CUGUGGUg -5'
18994 3' -58.2 NC_004684.1 + 9370 0.7 0.393077
Target:  5'- uCGGCgUCGggaacucgacAUCGGCCAGCucggGGaugaGCACCGCc -3'
miRNA:   3'- -GCCG-AGU----------UAGCCGGUCG----CC----UGUGGUG- -5'
18994 3' -58.2 NC_004684.1 + 9394 0.68 0.457713
Target:  5'- cCGGUaccgacgacagCGAUCaGGCCAGCcuGGACAgCCGCg -3'
miRNA:   3'- -GCCGa----------GUUAG-CCGGUCG--CCUGU-GGUG- -5'
18994 3' -58.2 NC_004684.1 + 9662 0.67 0.526584
Target:  5'- aCGGaUCAgGUCGGCCAcguguucGCGGcGCACCGg -3'
miRNA:   3'- -GCCgAGU-UAGCCGGU-------CGCC-UGUGGUg -5'
18994 3' -58.2 NC_004684.1 + 10265 0.66 0.590475
Target:  5'- gGGCcaacCAAcUGGCCAGCG-ACGCCGg -3'
miRNA:   3'- gCCGa---GUUaGCCGGUCGCcUGUGGUg -5'
18994 3' -58.2 NC_004684.1 + 10511 0.7 0.375728
Target:  5'- gGGCcgcCGA-CGGUCAGCGcGCACCGCu -3'
miRNA:   3'- gCCGa--GUUaGCCGGUCGCcUGUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.