miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18994 3' -58.2 NC_004684.1 + 13479 1.08 0.000703
Target:  5'- cCGGCUCAAUCGGCCAGCGGACACCACc -3'
miRNA:   3'- -GCCGAGUUAGCCGGUCGCCUGUGGUG- -5'
18994 3' -58.2 NC_004684.1 + 54220 0.8 0.088453
Target:  5'- gGGCcgaGGUCGGCCAGCagcuguuccaGGGCACCGCg -3'
miRNA:   3'- gCCGag-UUAGCCGGUCG----------CCUGUGGUG- -5'
18994 3' -58.2 NC_004684.1 + 15191 0.78 0.113333
Target:  5'- aCGGCaaGGUCGGCCuccagGGCGGcCACCGCg -3'
miRNA:   3'- -GCCGagUUAGCCGG-----UCGCCuGUGGUG- -5'
18994 3' -58.2 NC_004684.1 + 5342 0.77 0.13305
Target:  5'- uGGcCUCGAacuguucuuuuguUCGGCCGcgcGCGGACACCAUg -3'
miRNA:   3'- gCC-GAGUU-------------AGCCGGU---CGCCUGUGGUG- -5'
18994 3' -58.2 NC_004684.1 + 49084 0.76 0.165273
Target:  5'- gGGgUCGGgccCGGCCAGCaGGGCACCGa -3'
miRNA:   3'- gCCgAGUUa--GCCGGUCG-CCUGUGGUg -5'
18994 3' -58.2 NC_004684.1 + 24799 0.75 0.178892
Target:  5'- aCGGC-CAAggCGGUCGGCaacaucgcgcaGGACACCACa -3'
miRNA:   3'- -GCCGaGUUa-GCCGGUCG-----------CCUGUGGUG- -5'
18994 3' -58.2 NC_004684.1 + 6214 0.75 0.193498
Target:  5'- cCGGCgCGAucUCGGCCAGCuGGGCgGCCAg -3'
miRNA:   3'- -GCCGaGUU--AGCCGGUCG-CCUG-UGGUg -5'
18994 3' -58.2 NC_004684.1 + 46455 0.75 0.193498
Target:  5'- uCGGCgCGGUgGGCCAG-GGcCACCACg -3'
miRNA:   3'- -GCCGaGUUAgCCGGUCgCCuGUGGUG- -5'
18994 3' -58.2 NC_004684.1 + 40057 0.74 0.214589
Target:  5'- aCGGCUCucgucGUUGGUCAGCGugcggucgcaGAUACCGCa -3'
miRNA:   3'- -GCCGAGu----UAGCCGGUCGC----------CUGUGGUG- -5'
18994 3' -58.2 NC_004684.1 + 66258 0.74 0.225281
Target:  5'- gCGuGCUCAGcgCGGCgucguccCAGCGGACgGCCACg -3'
miRNA:   3'- -GC-CGAGUUa-GCCG-------GUCGCCUG-UGGUG- -5'
18994 3' -58.2 NC_004684.1 + 4887 0.73 0.237621
Target:  5'- gCGGCUCAggCGGCC--UGGuCGCCACc -3'
miRNA:   3'- -GCCGAGUuaGCCGGucGCCuGUGGUG- -5'
18994 3' -58.2 NC_004684.1 + 43440 0.73 0.243693
Target:  5'- aGGCcgaGGUCGGUgCGGCGGGCGCgGCa -3'
miRNA:   3'- gCCGag-UUAGCCG-GUCGCCUGUGgUG- -5'
18994 3' -58.2 NC_004684.1 + 66518 0.73 0.243693
Target:  5'- gGGCcgccuUCAGcgCGGcCCGGCGGGCACgGCg -3'
miRNA:   3'- gCCG-----AGUUa-GCC-GGUCGCCUGUGgUG- -5'
18994 3' -58.2 NC_004684.1 + 38310 0.73 0.248021
Target:  5'- aCGGgUCGAUCaccgaGGCCaagcucaaggacaaGGCGGugACCACg -3'
miRNA:   3'- -GCCgAGUUAG-----CCGG--------------UCGCCugUGGUG- -5'
18994 3' -58.2 NC_004684.1 + 35485 0.73 0.261384
Target:  5'- gCGGCUCAucCGGCCAccagguugcccuguuGCGGgaacgcccacagcugGCACCGCg -3'
miRNA:   3'- -GCCGAGUuaGCCGGU---------------CGCC---------------UGUGGUG- -5'
18994 3' -58.2 NC_004684.1 + 7801 0.71 0.304253
Target:  5'- uGGCUCA--CGGCCAGCGc-CACgGCg -3'
miRNA:   3'- gCCGAGUuaGCCGGUCGCcuGUGgUG- -5'
18994 3' -58.2 NC_004684.1 + 51236 0.71 0.304253
Target:  5'- uGGC-C-AUCGGCCGGUcGAUGCCGCa -3'
miRNA:   3'- gCCGaGuUAGCCGGUCGcCUGUGGUG- -5'
18994 3' -58.2 NC_004684.1 + 44260 0.71 0.311653
Target:  5'- uGGCgCAGUCGa-CGGCGGcACACCACu -3'
miRNA:   3'- gCCGaGUUAGCcgGUCGCC-UGUGGUG- -5'
18994 3' -58.2 NC_004684.1 + 19295 0.71 0.319189
Target:  5'- cCGGCUCAggcuAUCGcGCgGGCacGCACCACg -3'
miRNA:   3'- -GCCGAGU----UAGC-CGgUCGccUGUGGUG- -5'
18994 3' -58.2 NC_004684.1 + 49205 0.71 0.326861
Target:  5'- -uGCUCGGUCGGCCAGuCGGuCgguGCCGg -3'
miRNA:   3'- gcCGAGUUAGCCGGUC-GCCuG---UGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.