miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18996 5' -56.7 NC_004684.1 + 54205 0.66 0.721026
Target:  5'- cCGGCGgCCUgCUcgg-GGCCgAGGUCGg -3'
miRNA:   3'- -GCUGUgGGAgGAcuuaCCGG-UCCAGC- -5'
18996 5' -56.7 NC_004684.1 + 3945 0.66 0.721026
Target:  5'- uGACGuuCUCCgcaccgGAcgaccccGGCCAGGUCa -3'
miRNA:   3'- gCUGUggGAGGa-----CUua-----CCGGUCCAGc -5'
18996 5' -56.7 NC_004684.1 + 20813 0.66 0.71061
Target:  5'- aGGCGCuCCUCggguucggGggUGaCCGGGUCGg -3'
miRNA:   3'- gCUGUG-GGAGga------CuuACcGGUCCAGC- -5'
18996 5' -56.7 NC_004684.1 + 43987 0.66 0.71061
Target:  5'- gGGCguACCCggccagCUGcguUGGCCAGGUCa -3'
miRNA:   3'- gCUG--UGGGag----GACuu-ACCGGUCCAGc -5'
18996 5' -56.7 NC_004684.1 + 1827 0.66 0.689571
Target:  5'- gGAcCGCCCUCgguGGUGGUgAGGUCGc -3'
miRNA:   3'- gCU-GUGGGAGgacUUACCGgUCCAGC- -5'
18996 5' -56.7 NC_004684.1 + 41571 0.66 0.686395
Target:  5'- gCGACACCUUgCUucGgcggcggcauuuccUGGCgCAGGUCGg -3'
miRNA:   3'- -GCUGUGGGAgGAcuU--------------ACCG-GUCCAGC- -5'
18996 5' -56.7 NC_004684.1 + 4717 0.66 0.678968
Target:  5'- gGACuuGCCCUCCUGcggcGGgCAGGUg- -3'
miRNA:   3'- gCUG--UGGGAGGACuua-CCgGUCCAgc -5'
18996 5' -56.7 NC_004684.1 + 11257 0.67 0.646945
Target:  5'- uGAC-CCaCUCgCUGGc-GGCCAGGUCc -3'
miRNA:   3'- gCUGuGG-GAG-GACUuaCCGGUCCAGc -5'
18996 5' -56.7 NC_004684.1 + 23649 0.67 0.646945
Target:  5'- uGGCACCgCUgCUGAccggguacaccgAcGGCCuGGUCGg -3'
miRNA:   3'- gCUGUGG-GAgGACU------------UaCCGGuCCAGC- -5'
18996 5' -56.7 NC_004684.1 + 506 0.67 0.636232
Target:  5'- aCGACACgCUCCUGGAgcugcugcaaGGCCuGGa-- -3'
miRNA:   3'- -GCUGUGgGAGGACUUa---------CCGGuCCagc -5'
18996 5' -56.7 NC_004684.1 + 45963 0.67 0.614804
Target:  5'- aCGGCGgCCUCCaUGAccucGGCCAGuucGUCGu -3'
miRNA:   3'- -GCUGUgGGAGG-ACUua--CCGGUC---CAGC- -5'
18996 5' -56.7 NC_004684.1 + 38444 0.68 0.604108
Target:  5'- -cGCGCCCUCgUUGAGcuugGGCguGGUCa -3'
miRNA:   3'- gcUGUGGGAG-GACUUa---CCGguCCAGc -5'
18996 5' -56.7 NC_004684.1 + 9577 0.68 0.604108
Target:  5'- aCGugGCCgaCCUGAuccGUGGCUGGGa-- -3'
miRNA:   3'- -GCugUGGgaGGACU---UACCGGUCCagc -5'
18996 5' -56.7 NC_004684.1 + 13878 0.68 0.593434
Target:  5'- gCGACACCg-CgCUGGA-GGCgCAGGUUGg -3'
miRNA:   3'- -GCUGUGGgaG-GACUUaCCG-GUCCAGC- -5'
18996 5' -56.7 NC_004684.1 + 32075 0.68 0.550079
Target:  5'- gCGACGCaCCgcgUCUGGGugagcguUGGCCAGG-CGg -3'
miRNA:   3'- -GCUGUG-GGa--GGACUU-------ACCGGUCCaGC- -5'
18996 5' -56.7 NC_004684.1 + 26403 0.69 0.524117
Target:  5'- uCGGCgGCCCggcggCCUGGccgagcugcguaccgAUGGCCgAGGUCa -3'
miRNA:   3'- -GCUG-UGGGa----GGACU---------------UACCGG-UCCAGc -5'
18996 5' -56.7 NC_004684.1 + 10073 0.69 0.509783
Target:  5'- aCGACACCC-CCguGGUGcGCCGGGUg- -3'
miRNA:   3'- -GCUGUGGGaGGacUUAC-CGGUCCAgc -5'
18996 5' -56.7 NC_004684.1 + 2443 0.71 0.422178
Target:  5'- cCGACaucGCCCgCCUGGGcGGCCAGcUCGg -3'
miRNA:   3'- -GCUG---UGGGaGGACUUaCCGGUCcAGC- -5'
18996 5' -56.7 NC_004684.1 + 25174 0.71 0.403959
Target:  5'- cCGACGCCaucuccgaCCUGGuUGGCCAGG-CGc -3'
miRNA:   3'- -GCUGUGGga------GGACUuACCGGUCCaGC- -5'
18996 5' -56.7 NC_004684.1 + 14882 0.71 0.403959
Target:  5'- cCGGCACCCguccgcagaaCCUGGacaccuucGUGGCCAuGGUCc -3'
miRNA:   3'- -GCUGUGGGa---------GGACU--------UACCGGU-CCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.