Results 1 - 20 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18997 | 3' | -55.9 | NC_004684.1 | + | 2391 | 0.73 | 0.370868 |
Target: 5'- uUCGCCGGGugCGGCG-UGCACGuCGu -3' miRNA: 3'- cAGCGGCCCuaGCUGCaACGUGCuGU- -5' |
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18997 | 3' | -55.9 | NC_004684.1 | + | 7392 | 0.67 | 0.703354 |
Target: 5'- aUgGCCGGGuucgCGugGUgcaGUGCGGCGa -3' miRNA: 3'- cAgCGGCCCua--GCugCAa--CGUGCUGU- -5' |
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18997 | 3' | -55.9 | NC_004684.1 | + | 8169 | 0.7 | 0.512399 |
Target: 5'- -gUGUCGGGGUCGAUGgcGCugG-CAa -3' miRNA: 3'- caGCGGCCCUAGCUGCaaCGugCuGU- -5' |
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18997 | 3' | -55.9 | NC_004684.1 | + | 8717 | 0.69 | 0.596412 |
Target: 5'- -gUGCCGaGGAUCGGCGgugccggUGCACcgGGCu -3' miRNA: 3'- caGCGGC-CCUAGCUGCa------ACGUG--CUGu -5' |
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18997 | 3' | -55.9 | NC_004684.1 | + | 9724 | 0.67 | 0.71385 |
Target: 5'- -aUGCCGGGAauguucauguUCaGCGccUGCACGGCGc -3' miRNA: 3'- caGCGGCCCU----------AGcUGCa-ACGUGCUGU- -5' |
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18997 | 3' | -55.9 | NC_004684.1 | + | 10352 | 0.68 | 0.617854 |
Target: 5'- -cCGCCGGGGagGACa-UGCGCGAg- -3' miRNA: 3'- caGCGGCCCUagCUGcaACGUGCUgu -5' |
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18997 | 3' | -55.9 | NC_004684.1 | + | 10425 | 0.66 | 0.744836 |
Target: 5'- -cCGgCGGGGUCGAUGgcggccUGCguuGCGGCGc -3' miRNA: 3'- caGCgGCCCUAGCUGCa-----ACG---UGCUGU- -5' |
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18997 | 3' | -55.9 | NC_004684.1 | + | 12200 | 0.69 | 0.575084 |
Target: 5'- --aGCCGGGGUCGgGgGUUGCGUGAUg -3' miRNA: 3'- cagCGGCCCUAGC-UgCAACGUGCUGu -5' |
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18997 | 3' | -55.9 | NC_004684.1 | + | 13036 | 0.69 | 0.596412 |
Target: 5'- cGUCGCCGGGccgGUCGGC-UUccgcgagaucgcGCugGGCAu -3' miRNA: 3'- -CAGCGGCCC---UAGCUGcAA------------CGugCUGU- -5' |
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18997 | 3' | -55.9 | NC_004684.1 | + | 14339 | 1.08 | 0.00151 |
Target: 5'- uGUCGCCGGGAUCGACGUUGCACGACAc -3' miRNA: 3'- -CAGCGGCCCUAGCUGCAACGUGCUGU- -5' |
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18997 | 3' | -55.9 | NC_004684.1 | + | 15063 | 0.66 | 0.764967 |
Target: 5'- -aCGCCGGaugaGGUCGACGgccuuaucgGCGCGGu- -3' miRNA: 3'- caGCGGCC----CUAGCUGCaa-------CGUGCUgu -5' |
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18997 | 3' | -55.9 | NC_004684.1 | + | 16276 | 0.66 | 0.754961 |
Target: 5'- -gCGCCGGGccCGACGcgGCGCuuCAc -3' miRNA: 3'- caGCGGCCCuaGCUGCaaCGUGcuGU- -5' |
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18997 | 3' | -55.9 | NC_004684.1 | + | 16972 | 0.66 | 0.754961 |
Target: 5'- aUUGCuauuCGGGGgaauuaCGGCGUUGCugGGCc -3' miRNA: 3'- cAGCG----GCCCUa-----GCUGCAACGugCUGu -5' |
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18997 | 3' | -55.9 | NC_004684.1 | + | 18906 | 0.67 | 0.66081 |
Target: 5'- cGUCGgCGGGGUCG-CGgcGCAUcaGACc -3' miRNA: 3'- -CAGCgGCCCUAGCuGCaaCGUG--CUGu -5' |
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18997 | 3' | -55.9 | NC_004684.1 | + | 20172 | 0.69 | 0.596412 |
Target: 5'- uGUCGUCGGGGUUGAaCGccagcuugaGCGCGGCc -3' miRNA: 3'- -CAGCGGCCCUAGCU-GCaa-------CGUGCUGu -5' |
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18997 | 3' | -55.9 | NC_004684.1 | + | 22422 | 0.66 | 0.72427 |
Target: 5'- -cCGCUGGGccucaacgccAUCGcCGUcgGCGCGGCGg -3' miRNA: 3'- caGCGGCCC----------UAGCuGCAa-CGUGCUGU- -5' |
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18997 | 3' | -55.9 | NC_004684.1 | + | 23771 | 0.69 | 0.553935 |
Target: 5'- -cCGUgGGGcgCGGCGUuggGCGCGAUg -3' miRNA: 3'- caGCGgCCCuaGCUGCAa--CGUGCUGu -5' |
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18997 | 3' | -55.9 | NC_004684.1 | + | 27126 | 0.8 | 0.123616 |
Target: 5'- cGUUGCCGGGAcgcugaUCGACG-UGCugGGCGa -3' miRNA: 3'- -CAGCGGCCCU------AGCUGCaACGugCUGU- -5' |
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18997 | 3' | -55.9 | NC_004684.1 | + | 27766 | 0.7 | 0.534062 |
Target: 5'- uGUCGcCCGGGcuguacaccccgccCGACGgUGCGCGGCGg -3' miRNA: 3'- -CAGC-GGCCCua------------GCUGCaACGUGCUGU- -5' |
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18997 | 3' | -55.9 | NC_004684.1 | + | 28144 | 0.67 | 0.71385 |
Target: 5'- -cCGCCGGGGcCGACcaccgGCAUGAUc -3' miRNA: 3'- caGCGGCCCUaGCUGcaa--CGUGCUGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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