miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18997 3' -55.9 NC_004684.1 + 2391 0.73 0.370868
Target:  5'- uUCGCCGGGugCGGCG-UGCACGuCGu -3'
miRNA:   3'- cAGCGGCCCuaGCUGCaACGUGCuGU- -5'
18997 3' -55.9 NC_004684.1 + 7392 0.67 0.703354
Target:  5'- aUgGCCGGGuucgCGugGUgcaGUGCGGCGa -3'
miRNA:   3'- cAgCGGCCCua--GCugCAa--CGUGCUGU- -5'
18997 3' -55.9 NC_004684.1 + 8169 0.7 0.512399
Target:  5'- -gUGUCGGGGUCGAUGgcGCugG-CAa -3'
miRNA:   3'- caGCGGCCCUAGCUGCaaCGugCuGU- -5'
18997 3' -55.9 NC_004684.1 + 8717 0.69 0.596412
Target:  5'- -gUGCCGaGGAUCGGCGgugccggUGCACcgGGCu -3'
miRNA:   3'- caGCGGC-CCUAGCUGCa------ACGUG--CUGu -5'
18997 3' -55.9 NC_004684.1 + 9724 0.67 0.71385
Target:  5'- -aUGCCGGGAauguucauguUCaGCGccUGCACGGCGc -3'
miRNA:   3'- caGCGGCCCU----------AGcUGCa-ACGUGCUGU- -5'
18997 3' -55.9 NC_004684.1 + 10352 0.68 0.617854
Target:  5'- -cCGCCGGGGagGACa-UGCGCGAg- -3'
miRNA:   3'- caGCGGCCCUagCUGcaACGUGCUgu -5'
18997 3' -55.9 NC_004684.1 + 10425 0.66 0.744836
Target:  5'- -cCGgCGGGGUCGAUGgcggccUGCguuGCGGCGc -3'
miRNA:   3'- caGCgGCCCUAGCUGCa-----ACG---UGCUGU- -5'
18997 3' -55.9 NC_004684.1 + 12200 0.69 0.575084
Target:  5'- --aGCCGGGGUCGgGgGUUGCGUGAUg -3'
miRNA:   3'- cagCGGCCCUAGC-UgCAACGUGCUGu -5'
18997 3' -55.9 NC_004684.1 + 13036 0.69 0.596412
Target:  5'- cGUCGCCGGGccgGUCGGC-UUccgcgagaucgcGCugGGCAu -3'
miRNA:   3'- -CAGCGGCCC---UAGCUGcAA------------CGugCUGU- -5'
18997 3' -55.9 NC_004684.1 + 14339 1.08 0.00151
Target:  5'- uGUCGCCGGGAUCGACGUUGCACGACAc -3'
miRNA:   3'- -CAGCGGCCCUAGCUGCAACGUGCUGU- -5'
18997 3' -55.9 NC_004684.1 + 15063 0.66 0.764967
Target:  5'- -aCGCCGGaugaGGUCGACGgccuuaucgGCGCGGu- -3'
miRNA:   3'- caGCGGCC----CUAGCUGCaa-------CGUGCUgu -5'
18997 3' -55.9 NC_004684.1 + 16276 0.66 0.754961
Target:  5'- -gCGCCGGGccCGACGcgGCGCuuCAc -3'
miRNA:   3'- caGCGGCCCuaGCUGCaaCGUGcuGU- -5'
18997 3' -55.9 NC_004684.1 + 16972 0.66 0.754961
Target:  5'- aUUGCuauuCGGGGgaauuaCGGCGUUGCugGGCc -3'
miRNA:   3'- cAGCG----GCCCUa-----GCUGCAACGugCUGu -5'
18997 3' -55.9 NC_004684.1 + 18906 0.67 0.66081
Target:  5'- cGUCGgCGGGGUCG-CGgcGCAUcaGACc -3'
miRNA:   3'- -CAGCgGCCCUAGCuGCaaCGUG--CUGu -5'
18997 3' -55.9 NC_004684.1 + 20172 0.69 0.596412
Target:  5'- uGUCGUCGGGGUUGAaCGccagcuugaGCGCGGCc -3'
miRNA:   3'- -CAGCGGCCCUAGCU-GCaa-------CGUGCUGu -5'
18997 3' -55.9 NC_004684.1 + 22422 0.66 0.72427
Target:  5'- -cCGCUGGGccucaacgccAUCGcCGUcgGCGCGGCGg -3'
miRNA:   3'- caGCGGCCC----------UAGCuGCAa-CGUGCUGU- -5'
18997 3' -55.9 NC_004684.1 + 23771 0.69 0.553935
Target:  5'- -cCGUgGGGcgCGGCGUuggGCGCGAUg -3'
miRNA:   3'- caGCGgCCCuaGCUGCAa--CGUGCUGu -5'
18997 3' -55.9 NC_004684.1 + 27126 0.8 0.123616
Target:  5'- cGUUGCCGGGAcgcugaUCGACG-UGCugGGCGa -3'
miRNA:   3'- -CAGCGGCCCU------AGCUGCaACGugCUGU- -5'
18997 3' -55.9 NC_004684.1 + 27766 0.7 0.534062
Target:  5'- uGUCGcCCGGGcuguacaccccgccCGACGgUGCGCGGCGg -3'
miRNA:   3'- -CAGC-GGCCCua------------GCUGCaACGUGCUGU- -5'
18997 3' -55.9 NC_004684.1 + 28144 0.67 0.71385
Target:  5'- -cCGCCGGGGcCGACcaccgGCAUGAUc -3'
miRNA:   3'- caGCGGCCCUaGCUGcaa--CGUGCUGu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.