miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18997 3' -55.9 NC_004684.1 + 16276 0.66 0.754961
Target:  5'- -gCGCCGGGccCGACGcgGCGCuuCAc -3'
miRNA:   3'- caGCGGCCCuaGCUGCaaCGUGcuGU- -5'
18997 3' -55.9 NC_004684.1 + 53075 0.69 0.596412
Target:  5'- cUCGCUGGuacCGGCGUacaccUGCGCGGCGg -3'
miRNA:   3'- cAGCGGCCcuaGCUGCA-----ACGUGCUGU- -5'
18997 3' -55.9 NC_004684.1 + 10352 0.68 0.617854
Target:  5'- -cCGCCGGGGagGACa-UGCGCGAg- -3'
miRNA:   3'- caGCGGCCCUagCUGcaACGUGCUgu -5'
18997 3' -55.9 NC_004684.1 + 42532 0.68 0.628598
Target:  5'- -cCGCCGuGGUCGGCG-UGCugACGGCGu -3'
miRNA:   3'- caGCGGCcCUAGCUGCaACG--UGCUGU- -5'
18997 3' -55.9 NC_004684.1 + 28415 0.68 0.639345
Target:  5'- -cCGCCGGuugaccugguGGUCGACug-GCAUGACAu -3'
miRNA:   3'- caGCGGCC----------CUAGCUGcaaCGUGCUGU- -5'
18997 3' -55.9 NC_004684.1 + 18906 0.67 0.66081
Target:  5'- cGUCGgCGGGGUCG-CGgcGCAUcaGACc -3'
miRNA:   3'- -CAGCgGCCCUAGCuGCaaCGUG--CUGu -5'
18997 3' -55.9 NC_004684.1 + 63179 0.67 0.692791
Target:  5'- -gCGCCGGGucgacUCGACGcgGCcgaACGGCc -3'
miRNA:   3'- caGCGGCCCu----AGCUGCaaCG---UGCUGu -5'
18997 3' -55.9 NC_004684.1 + 29445 0.67 0.7023
Target:  5'- -cCGCUGGGcgaccgguucgacAUCGACcuggUGCGCGACc -3'
miRNA:   3'- caGCGGCCC-------------UAGCUGca--ACGUGCUGu -5'
18997 3' -55.9 NC_004684.1 + 22422 0.66 0.72427
Target:  5'- -cCGCUGGGccucaacgccAUCGcCGUcgGCGCGGCGg -3'
miRNA:   3'- caGCGGCCC----------UAGCuGCAa-CGUGCUGU- -5'
18997 3' -55.9 NC_004684.1 + 13036 0.69 0.596412
Target:  5'- cGUCGCCGGGccgGUCGGC-UUccgcgagaucgcGCugGGCAu -3'
miRNA:   3'- -CAGCGGCCC---UAGCUGcAA------------CGugCUGU- -5'
18997 3' -55.9 NC_004684.1 + 23771 0.69 0.553935
Target:  5'- -cCGUgGGGcgCGGCGUuggGCGCGAUg -3'
miRNA:   3'- caGCGgCCCuaGCUGCAa--CGUGCUGu -5'
18997 3' -55.9 NC_004684.1 + 53798 0.69 0.553935
Target:  5'- -gCGCUGGGAUCGG-GUUGCGCcuccaugcgGGCGu -3'
miRNA:   3'- caGCGGCCCUAGCUgCAACGUG---------CUGU- -5'
18997 3' -55.9 NC_004684.1 + 2391 0.73 0.370868
Target:  5'- uUCGCCGGGugCGGCG-UGCACGuCGu -3'
miRNA:   3'- cAGCGGCCCuaGCUGCaACGUGCuGU- -5'
18997 3' -55.9 NC_004684.1 + 50609 0.72 0.379452
Target:  5'- gGUCGgCGGGucAUCGGCGUgGC-CGACAc -3'
miRNA:   3'- -CAGCgGCCC--UAGCUGCAaCGuGCUGU- -5'
18997 3' -55.9 NC_004684.1 + 40717 0.72 0.405989
Target:  5'- gGUgGCCGGGA-CGACca-GCGCGGCGg -3'
miRNA:   3'- -CAgCGGCCCUaGCUGcaaCGUGCUGU- -5'
18997 3' -55.9 NC_004684.1 + 49474 0.72 0.415091
Target:  5'- uUCGCCGGGGUUGuCGguccagaugUGCAgCGGCGc -3'
miRNA:   3'- cAGCGGCCCUAGCuGCa--------ACGU-GCUGU- -5'
18997 3' -55.9 NC_004684.1 + 47326 0.7 0.512399
Target:  5'- uGUCGCCGGuGUgGGCGUcgaGCAUGGCc -3'
miRNA:   3'- -CAGCGGCCcUAgCUGCAa--CGUGCUGu -5'
18997 3' -55.9 NC_004684.1 + 31654 0.7 0.533023
Target:  5'- -cCGCCGGGAcgcuggcacugUCGGCGgUGCGgGugAa -3'
miRNA:   3'- caGCGGCCCU-----------AGCUGCaACGUgCugU- -5'
18997 3' -55.9 NC_004684.1 + 48783 0.7 0.533023
Target:  5'- -aCGCCGGGcgggcCGAUGaUGCAgGACAg -3'
miRNA:   3'- caGCGGCCCua---GCUGCaACGUgCUGU- -5'
18997 3' -55.9 NC_004684.1 + 27766 0.7 0.534062
Target:  5'- uGUCGcCCGGGcuguacaccccgccCGACGgUGCGCGGCGg -3'
miRNA:   3'- -CAGC-GGCCCua------------GCUGCaACGUGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.