Results 1 - 20 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18997 | 3' | -55.9 | NC_004684.1 | + | 14339 | 1.08 | 0.00151 |
Target: 5'- uGUCGCCGGGAUCGACGUUGCACGACAc -3' miRNA: 3'- -CAGCGGCCCUAGCUGCAACGUGCUGU- -5' |
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18997 | 3' | -55.9 | NC_004684.1 | + | 49404 | 0.66 | 0.744836 |
Target: 5'- -cCGCCGacGGGUCGAUccUGgACGGCAa -3' miRNA: 3'- caGCGGC--CCUAGCUGcaACgUGCUGU- -5' |
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18997 | 3' | -55.9 | NC_004684.1 | + | 60694 | 0.66 | 0.764967 |
Target: 5'- -gCGCCGGGugacCGGCcugcgcaccgUGCGCGGCGu -3' miRNA: 3'- caGCGGCCCua--GCUGca--------ACGUGCUGU- -5' |
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18997 | 3' | -55.9 | NC_004684.1 | + | 52721 | 0.66 | 0.764967 |
Target: 5'- -aUGCCGGuGAUggCGACG-UGCcCGGCAc -3' miRNA: 3'- caGCGGCC-CUA--GCUGCaACGuGCUGU- -5' |
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18997 | 3' | -55.9 | NC_004684.1 | + | 61179 | 0.72 | 0.424317 |
Target: 5'- cGUCGaCCGGuGG-CGGCGUUGCGgaGACAa -3' miRNA: 3'- -CAGC-GGCC-CUaGCUGCAACGUg-CUGU- -5' |
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18997 | 3' | -55.9 | NC_004684.1 | + | 42482 | 0.71 | 0.433664 |
Target: 5'- -gCGuuGGGGUCGGCGggGC-CGAUu -3' miRNA: 3'- caGCggCCCUAGCUGCaaCGuGCUGu -5' |
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18997 | 3' | -55.9 | NC_004684.1 | + | 12200 | 0.69 | 0.575084 |
Target: 5'- --aGCCGGGGUCGgGgGUUGCGUGAUg -3' miRNA: 3'- cagCGGCCCUAGC-UgCAACGUGCUGu -5' |
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18997 | 3' | -55.9 | NC_004684.1 | + | 20172 | 0.69 | 0.596412 |
Target: 5'- uGUCGUCGGGGUUGAaCGccagcuugaGCGCGGCc -3' miRNA: 3'- -CAGCGGCCCUAGCU-GCaa-------CGUGCUGu -5' |
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18997 | 3' | -55.9 | NC_004684.1 | + | 43366 | 0.67 | 0.682173 |
Target: 5'- aUCGCCaaGGA-CGugG-UGCGCGGCGa -3' miRNA: 3'- cAGCGGc-CCUaGCugCaACGUGCUGU- -5' |
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18997 | 3' | -55.9 | NC_004684.1 | + | 52465 | 0.66 | 0.734602 |
Target: 5'- -cCGCCuGGAUCGGCug-GgACGGCAc -3' miRNA: 3'- caGCGGcCCUAGCUGcaaCgUGCUGU- -5' |
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18997 | 3' | -55.9 | NC_004684.1 | + | 7392 | 0.67 | 0.703354 |
Target: 5'- aUgGCCGGGuucgCGugGUgcaGUGCGGCGa -3' miRNA: 3'- cAgCGGCCCua--GCugCAa--CGUGCUGU- -5' |
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18997 | 3' | -55.9 | NC_004684.1 | + | 37799 | 0.68 | 0.607123 |
Target: 5'- cUCGCCGGGcgCaagGugGUUGCguACGAaCAg -3' miRNA: 3'- cAGCGGCCCuaG---CugCAACG--UGCU-GU- -5' |
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18997 | 3' | -55.9 | NC_004684.1 | + | 35882 | 0.76 | 0.245744 |
Target: 5'- cGUCGCCGGGGacugcgccaCGAUGgaGCGCGGCGc -3' miRNA: 3'- -CAGCGGCCCUa--------GCUGCaaCGUGCUGU- -5' |
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18997 | 3' | -55.9 | NC_004684.1 | + | 28144 | 0.67 | 0.71385 |
Target: 5'- -cCGCCGGGGcCGACcaccgGCAUGAUc -3' miRNA: 3'- caGCGGCCCUaGCUGcaa--CGUGCUGu -5' |
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18997 | 3' | -55.9 | NC_004684.1 | + | 53332 | 0.72 | 0.382923 |
Target: 5'- -gCGCCGGGAUcaccuacccgugccaCGugGUggUGCugGGCAc -3' miRNA: 3'- caGCGGCCCUA---------------GCugCA--ACGugCUGU- -5' |
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18997 | 3' | -55.9 | NC_004684.1 | + | 8717 | 0.69 | 0.596412 |
Target: 5'- -gUGCCGaGGAUCGGCGgugccggUGCACcgGGCu -3' miRNA: 3'- caGCGGC-CCUAGCUGCa------ACGUG--CUGu -5' |
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18997 | 3' | -55.9 | NC_004684.1 | + | 9724 | 0.67 | 0.71385 |
Target: 5'- -aUGCCGGGAauguucauguUCaGCGccUGCACGGCGc -3' miRNA: 3'- caGCGGCCCU----------AGcUGCa-ACGUGCUGU- -5' |
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18997 | 3' | -55.9 | NC_004684.1 | + | 10425 | 0.66 | 0.744836 |
Target: 5'- -cCGgCGGGGUCGAUGgcggccUGCguuGCGGCGc -3' miRNA: 3'- caGCgGCCCUAGCUGCa-----ACG---UGCUGU- -5' |
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18997 | 3' | -55.9 | NC_004684.1 | + | 63185 | 0.72 | 0.388169 |
Target: 5'- -cCGCCGGG-UCGcCGUaauguagugcuUGCACGGCGg -3' miRNA: 3'- caGCGGCCCuAGCuGCA-----------ACGUGCUGU- -5' |
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18997 | 3' | -55.9 | NC_004684.1 | + | 8169 | 0.7 | 0.512399 |
Target: 5'- -gUGUCGGGGUCGAUGgcGCugG-CAa -3' miRNA: 3'- caGCGGCCCUAGCUGCaaCGugCuGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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