miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18997 3' -55.9 NC_004684.1 + 28415 0.68 0.639345
Target:  5'- -cCGCCGGuugaccugguGGUCGACug-GCAUGACAu -3'
miRNA:   3'- caGCGGCC----------CUAGCUGcaaCGUGCUGU- -5'
18997 3' -55.9 NC_004684.1 + 29445 0.67 0.7023
Target:  5'- -cCGCUGGGcgaccgguucgacAUCGACcuggUGCGCGACc -3'
miRNA:   3'- caGCGGCCC-------------UAGCUGca--ACGUGCUGu -5'
18997 3' -55.9 NC_004684.1 + 29505 0.67 0.692792
Target:  5'- -gCGCacgauGGGGUCGACGUUG-AUGGCc -3'
miRNA:   3'- caGCGg----CCCUAGCUGCAACgUGCUGu -5'
18997 3' -55.9 NC_004684.1 + 30962 0.66 0.754961
Target:  5'- cUCGCUGuGGAaCGGCG-UGguCGGCAc -3'
miRNA:   3'- cAGCGGC-CCUaGCUGCaACguGCUGU- -5'
18997 3' -55.9 NC_004684.1 + 31654 0.7 0.533023
Target:  5'- -cCGCCGGGAcgcuggcacugUCGGCGgUGCGgGugAa -3'
miRNA:   3'- caGCGGCCCU-----------AGCUGCaACGUgCugU- -5'
18997 3' -55.9 NC_004684.1 + 33659 0.66 0.773861
Target:  5'- cUCGCCGGGcaUGGCGUcgcugUGCACcaccaccgcgcugGACAc -3'
miRNA:   3'- cAGCGGCCCuaGCUGCA-----ACGUG-------------CUGU- -5'
18997 3' -55.9 NC_004684.1 + 35882 0.76 0.245744
Target:  5'- cGUCGCCGGGGacugcgccaCGAUGgaGCGCGGCGc -3'
miRNA:   3'- -CAGCGGCCCUa--------GCUGCaaCGUGCUGU- -5'
18997 3' -55.9 NC_004684.1 + 36714 0.66 0.774842
Target:  5'- cGUCGCCGGGGguuaccgcaUCGACcuGUUcgccgucccgGCGCuGACGc -3'
miRNA:   3'- -CAGCGGCCCU---------AGCUG--CAA----------CGUG-CUGU- -5'
18997 3' -55.9 NC_004684.1 + 37799 0.68 0.607123
Target:  5'- cUCGCCGGGcgCaagGugGUUGCguACGAaCAg -3'
miRNA:   3'- cAGCGGCCCuaG---CugCAACG--UGCU-GU- -5'
18997 3' -55.9 NC_004684.1 + 40717 0.72 0.405989
Target:  5'- gGUgGCCGGGA-CGACca-GCGCGGCGg -3'
miRNA:   3'- -CAgCGGCCCUaGCUGcaaCGUGCUGU- -5'
18997 3' -55.9 NC_004684.1 + 42227 0.66 0.764967
Target:  5'- -cCGCCGGuGUCGGCaccgGCGCGAa- -3'
miRNA:   3'- caGCGGCCcUAGCUGcaa-CGUGCUgu -5'
18997 3' -55.9 NC_004684.1 + 42482 0.71 0.433664
Target:  5'- -gCGuuGGGGUCGGCGggGC-CGAUu -3'
miRNA:   3'- caGCggCCCUAGCUGCaaCGuGCUGu -5'
18997 3' -55.9 NC_004684.1 + 42532 0.68 0.628598
Target:  5'- -cCGCCGuGGUCGGCG-UGCugACGGCGu -3'
miRNA:   3'- caGCGGCcCUAGCUGCaACG--UGCUGU- -5'
18997 3' -55.9 NC_004684.1 + 43366 0.67 0.682173
Target:  5'- aUCGCCaaGGA-CGugG-UGCGCGGCGa -3'
miRNA:   3'- cAGCGGc-CCUaGCugCaACGUGCUGU- -5'
18997 3' -55.9 NC_004684.1 + 47326 0.7 0.512399
Target:  5'- uGUCGCCGGuGUgGGCGUcgaGCAUGGCc -3'
miRNA:   3'- -CAGCGGCCcUAgCUGCAa--CGUGCUGu -5'
18997 3' -55.9 NC_004684.1 + 48783 0.7 0.533023
Target:  5'- -aCGCCGGGcgggcCGAUGaUGCAgGACAg -3'
miRNA:   3'- caGCGGCCCua---GCUGCaACGUgCUGU- -5'
18997 3' -55.9 NC_004684.1 + 49404 0.66 0.744836
Target:  5'- -cCGCCGacGGGUCGAUccUGgACGGCAa -3'
miRNA:   3'- caGCGGC--CCUAGCUGcaACgUGCUGU- -5'
18997 3' -55.9 NC_004684.1 + 49474 0.72 0.415091
Target:  5'- uUCGCCGGGGUUGuCGguccagaugUGCAgCGGCGc -3'
miRNA:   3'- cAGCGGCCCUAGCuGCa--------ACGU-GCUGU- -5'
18997 3' -55.9 NC_004684.1 + 50609 0.72 0.379452
Target:  5'- gGUCGgCGGGucAUCGGCGUgGC-CGACAc -3'
miRNA:   3'- -CAGCgGCCC--UAGCUGCAaCGuGCUGU- -5'
18997 3' -55.9 NC_004684.1 + 52465 0.66 0.734602
Target:  5'- -cCGCCuGGAUCGGCug-GgACGGCAc -3'
miRNA:   3'- caGCGGcCCUAGCUGcaaCgUGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.