miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18997 3' -55.9 NC_004684.1 + 8717 0.69 0.596412
Target:  5'- -gUGCCGaGGAUCGGCGgugccggUGCACcgGGCu -3'
miRNA:   3'- caGCGGC-CCUAGCUGCa------ACGUG--CUGu -5'
18997 3' -55.9 NC_004684.1 + 20172 0.69 0.596412
Target:  5'- uGUCGUCGGGGUUGAaCGccagcuugaGCGCGGCc -3'
miRNA:   3'- -CAGCGGCCCUAGCU-GCaa-------CGUGCUGu -5'
18997 3' -55.9 NC_004684.1 + 53075 0.69 0.596412
Target:  5'- cUCGCUGGuacCGGCGUacaccUGCGCGGCGg -3'
miRNA:   3'- cAGCGGCCcuaGCUGCA-----ACGUGCUGU- -5'
18997 3' -55.9 NC_004684.1 + 37799 0.68 0.607123
Target:  5'- cUCGCCGGGcgCaagGugGUUGCguACGAaCAg -3'
miRNA:   3'- cAGCGGCCCuaG---CugCAACG--UGCU-GU- -5'
18997 3' -55.9 NC_004684.1 + 10352 0.68 0.617854
Target:  5'- -cCGCCGGGGagGACa-UGCGCGAg- -3'
miRNA:   3'- caGCGGCCCUagCUGcaACGUGCUgu -5'
18997 3' -55.9 NC_004684.1 + 42532 0.68 0.628598
Target:  5'- -cCGCCGuGGUCGGCG-UGCugACGGCGu -3'
miRNA:   3'- caGCGGCcCUAGCUGCaACG--UGCUGU- -5'
18997 3' -55.9 NC_004684.1 + 28415 0.68 0.639345
Target:  5'- -cCGCCGGuugaccugguGGUCGACug-GCAUGACAu -3'
miRNA:   3'- caGCGGCC----------CUAGCUGcaaCGUGCUGU- -5'
18997 3' -55.9 NC_004684.1 + 18906 0.67 0.66081
Target:  5'- cGUCGgCGGGGUCG-CGgcGCAUcaGACc -3'
miRNA:   3'- -CAGCgGCCCUAGCuGCaaCGUG--CUGu -5'
18997 3' -55.9 NC_004684.1 + 43366 0.67 0.682173
Target:  5'- aUCGCCaaGGA-CGugG-UGCGCGGCGa -3'
miRNA:   3'- cAGCGGc-CCUaGCugCaACGUGCUGU- -5'
18997 3' -55.9 NC_004684.1 + 63179 0.67 0.692791
Target:  5'- -gCGCCGGGucgacUCGACGcgGCcgaACGGCc -3'
miRNA:   3'- caGCGGCCCu----AGCUGCaaCG---UGCUGu -5'
18997 3' -55.9 NC_004684.1 + 29505 0.67 0.692792
Target:  5'- -gCGCacgauGGGGUCGACGUUG-AUGGCc -3'
miRNA:   3'- caGCGg----CCCUAGCUGCAACgUGCUGu -5'
18997 3' -55.9 NC_004684.1 + 29445 0.67 0.7023
Target:  5'- -cCGCUGGGcgaccgguucgacAUCGACcuggUGCGCGACc -3'
miRNA:   3'- caGCGGCCC-------------UAGCUGca--ACGUGCUGu -5'
18997 3' -55.9 NC_004684.1 + 7392 0.67 0.703354
Target:  5'- aUgGCCGGGuucgCGugGUgcaGUGCGGCGa -3'
miRNA:   3'- cAgCGGCCCua--GCugCAa--CGUGCUGU- -5'
18997 3' -55.9 NC_004684.1 + 28144 0.67 0.71385
Target:  5'- -cCGCCGGGGcCGACcaccgGCAUGAUc -3'
miRNA:   3'- caGCGGCCCUaGCUGcaa--CGUGCUGu -5'
18997 3' -55.9 NC_004684.1 + 9724 0.67 0.71385
Target:  5'- -aUGCCGGGAauguucauguUCaGCGccUGCACGGCGc -3'
miRNA:   3'- caGCGGCCCU----------AGcUGCa-ACGUGCUGU- -5'
18997 3' -55.9 NC_004684.1 + 22422 0.66 0.72427
Target:  5'- -cCGCUGGGccucaacgccAUCGcCGUcgGCGCGGCGg -3'
miRNA:   3'- caGCGGCCC----------UAGCuGCAa-CGUGCUGU- -5'
18997 3' -55.9 NC_004684.1 + 52465 0.66 0.734602
Target:  5'- -cCGCCuGGAUCGGCug-GgACGGCAc -3'
miRNA:   3'- caGCGGcCCUAGCUGcaaCgUGCUGU- -5'
18997 3' -55.9 NC_004684.1 + 10425 0.66 0.744836
Target:  5'- -cCGgCGGGGUCGAUGgcggccUGCguuGCGGCGc -3'
miRNA:   3'- caGCgGCCCUAGCUGCa-----ACG---UGCUGU- -5'
18997 3' -55.9 NC_004684.1 + 49404 0.66 0.744836
Target:  5'- -cCGCCGacGGGUCGAUccUGgACGGCAa -3'
miRNA:   3'- caGCGGC--CCUAGCUGcaACgUGCUGU- -5'
18997 3' -55.9 NC_004684.1 + 16972 0.66 0.754961
Target:  5'- aUUGCuauuCGGGGgaauuaCGGCGUUGCugGGCc -3'
miRNA:   3'- cAGCG----GCCCUa-----GCUGCAACGugCUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.