miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18997 3' -55.9 NC_004684.1 + 63179 0.67 0.692791
Target:  5'- -gCGCCGGGucgacUCGACGcgGCcgaACGGCc -3'
miRNA:   3'- caGCGGCCCu----AGCUGCaaCG---UGCUGu -5'
18997 3' -55.9 NC_004684.1 + 43366 0.67 0.682173
Target:  5'- aUCGCCaaGGA-CGugG-UGCGCGGCGa -3'
miRNA:   3'- cAGCGGc-CCUaGCugCaACGUGCUGU- -5'
18997 3' -55.9 NC_004684.1 + 18906 0.67 0.66081
Target:  5'- cGUCGgCGGGGUCG-CGgcGCAUcaGACc -3'
miRNA:   3'- -CAGCgGCCCUAGCuGCaaCGUG--CUGu -5'
18997 3' -55.9 NC_004684.1 + 28415 0.68 0.639345
Target:  5'- -cCGCCGGuugaccugguGGUCGACug-GCAUGACAu -3'
miRNA:   3'- caGCGGCC----------CUAGCUGcaaCGUGCUGU- -5'
18997 3' -55.9 NC_004684.1 + 42532 0.68 0.628598
Target:  5'- -cCGCCGuGGUCGGCG-UGCugACGGCGu -3'
miRNA:   3'- caGCGGCcCUAGCUGCaACG--UGCUGU- -5'
18997 3' -55.9 NC_004684.1 + 10352 0.68 0.617854
Target:  5'- -cCGCCGGGGagGACa-UGCGCGAg- -3'
miRNA:   3'- caGCGGCCCUagCUGcaACGUGCUgu -5'
18997 3' -55.9 NC_004684.1 + 37799 0.68 0.607123
Target:  5'- cUCGCCGGGcgCaagGugGUUGCguACGAaCAg -3'
miRNA:   3'- cAGCGGCCCuaG---CugCAACG--UGCU-GU- -5'
18997 3' -55.9 NC_004684.1 + 53075 0.69 0.596412
Target:  5'- cUCGCUGGuacCGGCGUacaccUGCGCGGCGg -3'
miRNA:   3'- cAGCGGCCcuaGCUGCA-----ACGUGCUGU- -5'
18997 3' -55.9 NC_004684.1 + 13036 0.69 0.596412
Target:  5'- cGUCGCCGGGccgGUCGGC-UUccgcgagaucgcGCugGGCAu -3'
miRNA:   3'- -CAGCGGCCC---UAGCUGcAA------------CGugCUGU- -5'
18997 3' -55.9 NC_004684.1 + 8717 0.69 0.596412
Target:  5'- -gUGCCGaGGAUCGGCGgugccggUGCACcgGGCu -3'
miRNA:   3'- caGCGGC-CCUAGCUGCa------ACGUG--CUGu -5'
18997 3' -55.9 NC_004684.1 + 20172 0.69 0.596412
Target:  5'- uGUCGUCGGGGUUGAaCGccagcuugaGCGCGGCc -3'
miRNA:   3'- -CAGCGGCCCUAGCU-GCaa-------CGUGCUGu -5'
18997 3' -55.9 NC_004684.1 + 12200 0.69 0.575084
Target:  5'- --aGCCGGGGUCGgGgGUUGCGUGAUg -3'
miRNA:   3'- cagCGGCCCUAGC-UgCAACGUGCUGu -5'
18997 3' -55.9 NC_004684.1 + 53798 0.69 0.553935
Target:  5'- -gCGCUGGGAUCGG-GUUGCGCcuccaugcgGGCGu -3'
miRNA:   3'- caGCGGCCCUAGCUgCAACGUG---------CUGU- -5'
18997 3' -55.9 NC_004684.1 + 23771 0.69 0.553935
Target:  5'- -cCGUgGGGcgCGGCGUuggGCGCGAUg -3'
miRNA:   3'- caGCGgCCCuaGCUGCAa--CGUGCUGu -5'
18997 3' -55.9 NC_004684.1 + 27766 0.7 0.534062
Target:  5'- uGUCGcCCGGGcuguacaccccgccCGACGgUGCGCGGCGg -3'
miRNA:   3'- -CAGC-GGCCCua------------GCUGCaACGUGCUGU- -5'
18997 3' -55.9 NC_004684.1 + 31654 0.7 0.533023
Target:  5'- -cCGCCGGGAcgcuggcacugUCGGCGgUGCGgGugAa -3'
miRNA:   3'- caGCGGCCCU-----------AGCUGCaACGUgCugU- -5'
18997 3' -55.9 NC_004684.1 + 48783 0.7 0.533023
Target:  5'- -aCGCCGGGcgggcCGAUGaUGCAgGACAg -3'
miRNA:   3'- caGCGGCCCua---GCUGCaACGUgCUGU- -5'
18997 3' -55.9 NC_004684.1 + 8169 0.7 0.512399
Target:  5'- -gUGUCGGGGUCGAUGgcGCugG-CAa -3'
miRNA:   3'- caGCGGCCCUAGCUGCaaCGugCuGU- -5'
18997 3' -55.9 NC_004684.1 + 47326 0.7 0.512399
Target:  5'- uGUCGCCGGuGUgGGCGUcgaGCAUGGCc -3'
miRNA:   3'- -CAGCGGCCcUAgCUGCAa--CGUGCUGu -5'
18997 3' -55.9 NC_004684.1 + 42482 0.71 0.433664
Target:  5'- -gCGuuGGGGUCGGCGggGC-CGAUu -3'
miRNA:   3'- caGCggCCCUAGCUGCaaCGuGCUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.