miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18999 3' -54 NC_004684.1 + 13572 0.66 0.834591
Target:  5'- cGGCGguGGggUUGCcGUUGC-CGUc-- -3'
miRNA:   3'- -CCGCguCCaaGACG-CAACGuGCGuuc -5'
18999 3' -54 NC_004684.1 + 54376 0.66 0.834591
Target:  5'- gGGgGCGGGgUCgagGCcaUGCGgGCAAGu -3'
miRNA:   3'- -CCgCGUCCaAGa--CGcaACGUgCGUUC- -5'
18999 3' -54 NC_004684.1 + 199 0.66 0.825578
Target:  5'- gGGUGCAGGUgUUGCGc--CGgGCGAGc -3'
miRNA:   3'- -CCGCGUCCAaGACGCaacGUgCGUUC- -5'
18999 3' -54 NC_004684.1 + 33531 0.66 0.816361
Target:  5'- aGCGagccaUUCUGCGUUGCGCGgGAa -3'
miRNA:   3'- cCGCgucc-AAGACGCAACGUGCgUUc -5'
18999 3' -54 NC_004684.1 + 37217 0.66 0.816361
Target:  5'- cGGCGCAGuGcgCUG-GcgGCACGCcAGc -3'
miRNA:   3'- -CCGCGUC-CaaGACgCaaCGUGCGuUC- -5'
18999 3' -54 NC_004684.1 + 58336 0.66 0.816361
Target:  5'- uGGCGCGcccGGUggcccugCUgGCGUUGcCGCGCcGGu -3'
miRNA:   3'- -CCGCGU---CCAa------GA-CGCAAC-GUGCGuUC- -5'
18999 3' -54 NC_004684.1 + 32518 0.66 0.815428
Target:  5'- aGGUGCaucgccacgcccgAGGUgccgCUGCuGUUGCAcCGCAc- -3'
miRNA:   3'- -CCGCG-------------UCCAa---GACG-CAACGU-GCGUuc -5'
18999 3' -54 NC_004684.1 + 5776 0.66 0.80695
Target:  5'- gGGCGCAGcGcgcuaCUGCGccagGCGUGCGAGg -3'
miRNA:   3'- -CCGCGUC-Caa---GACGCaa--CGUGCGUUC- -5'
18999 3' -54 NC_004684.1 + 1779 0.66 0.80695
Target:  5'- aGGUGCAGGUUCggGCccggGUGCGUcGGu -3'
miRNA:   3'- -CCGCGUCCAAGa-CGcaa-CGUGCGuUC- -5'
18999 3' -54 NC_004684.1 + 29811 0.66 0.804091
Target:  5'- cGGCGUugacgauggucuggAGGUUCUGgcccacgaCGUUGaCGCGCGc- -3'
miRNA:   3'- -CCGCG--------------UCCAAGAC--------GCAAC-GUGCGUuc -5'
18999 3' -54 NC_004684.1 + 8543 0.67 0.786604
Target:  5'- uGGCGCgcaccggggagucAGGUUCccuggcccgGCGg-GCGCGCGGGu -3'
miRNA:   3'- -CCGCG-------------UCCAAGa--------CGCaaCGUGCGUUC- -5'
18999 3' -54 NC_004684.1 + 55838 0.67 0.777661
Target:  5'- cGGUgaGCGGGUaCUGCG-UGCAgUGCGAc -3'
miRNA:   3'- -CCG--CGUCCAaGACGCaACGU-GCGUUc -5'
18999 3' -54 NC_004684.1 + 65424 0.67 0.777661
Target:  5'- cGCGcCAGGcgCUGCGcuggcgugcgGCGCGCGGc -3'
miRNA:   3'- cCGC-GUCCaaGACGCaa--------CGUGCGUUc -5'
18999 3' -54 NC_004684.1 + 26570 0.67 0.767582
Target:  5'- cGGCGCGcccuGGcgCgcgGCGgUGUGCGCGGGu -3'
miRNA:   3'- -CCGCGU----CCaaGa--CGCaACGUGCGUUC- -5'
18999 3' -54 NC_004684.1 + 59322 0.67 0.767582
Target:  5'- cGUGCGGG-UCUGCGgguCACGCu-- -3'
miRNA:   3'- cCGCGUCCaAGACGCaacGUGCGuuc -5'
18999 3' -54 NC_004684.1 + 62123 0.67 0.736552
Target:  5'- uGGCGUcGGUgaaCU-CGUUGCACGCc-- -3'
miRNA:   3'- -CCGCGuCCAa--GAcGCAACGUGCGuuc -5'
18999 3' -54 NC_004684.1 + 4446 0.68 0.725984
Target:  5'- uGGCGCAGcuggaggCcGCacgUGCGCGCGAGg -3'
miRNA:   3'- -CCGCGUCcaa----GaCGca-ACGUGCGUUC- -5'
18999 3' -54 NC_004684.1 + 56075 0.68 0.725984
Target:  5'- aGGCGUggAGGUgCUGUGcgGCAUGCuGGc -3'
miRNA:   3'- -CCGCG--UCCAaGACGCaaCGUGCGuUC- -5'
18999 3' -54 NC_004684.1 + 23768 0.68 0.725984
Target:  5'- gGGcCGUGGGgcgCgGCGUUGgGCGCGAu -3'
miRNA:   3'- -CC-GCGUCCaa-GaCGCAACgUGCGUUc -5'
18999 3' -54 NC_004684.1 + 14452 0.68 0.71425
Target:  5'- cGCGCucuugauGGUcgcguugUCgGCGUUGUACGCGAu -3'
miRNA:   3'- cCGCGu------CCA-------AGaCGCAACGUGCGUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.