Results 1 - 20 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19000 | 3' | -57.2 | NC_004684.1 | + | 15163 | 1.05 | 0.001525 |
Target: 5'- cCGCGCCGAUAAGGCCGUCGACCUCAUc -3' miRNA: 3'- -GCGCGGCUAUUCCGGCAGCUGGAGUA- -5' |
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19000 | 3' | -57.2 | NC_004684.1 | + | 12840 | 0.76 | 0.186011 |
Target: 5'- cCGCGCgGGccaaGAGGgCGUCGACCUCGg -3' miRNA: 3'- -GCGCGgCUa---UUCCgGCAGCUGGAGUa -5' |
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19000 | 3' | -57.2 | NC_004684.1 | + | 6786 | 0.74 | 0.247041 |
Target: 5'- uCGCGCCGAcgguGGCCagGUCGACCUg-- -3' miRNA: 3'- -GCGCGGCUauu-CCGG--CAGCUGGAgua -5' |
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19000 | 3' | -57.2 | NC_004684.1 | + | 6072 | 0.74 | 0.247041 |
Target: 5'- cCGCGCUGGUAGccgauGCCGggggCGGCCUCGUa -3' miRNA: 3'- -GCGCGGCUAUUc----CGGCa---GCUGGAGUA- -5' |
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19000 | 3' | -57.2 | NC_004684.1 | + | 40244 | 0.73 | 0.28685 |
Target: 5'- -uUGCCGGUcucGGGGCgGUCGACCUUGUa -3' miRNA: 3'- gcGCGGCUA---UUCCGgCAGCUGGAGUA- -5' |
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19000 | 3' | -57.2 | NC_004684.1 | + | 44341 | 0.72 | 0.316095 |
Target: 5'- uGCGCuCGAUGAGGUCGUUGACg---- -3' miRNA: 3'- gCGCG-GCUAUUCCGGCAGCUGgagua -5' |
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19000 | 3' | -57.2 | NC_004684.1 | + | 41659 | 0.72 | 0.316095 |
Target: 5'- uGCGgCGuacgAAGGCCGggcCGACCUCGg -3' miRNA: 3'- gCGCgGCua--UUCCGGCa--GCUGGAGUa -5' |
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19000 | 3' | -57.2 | NC_004684.1 | + | 15061 | 0.72 | 0.32375 |
Target: 5'- gGaCGCCgGAUGAGGUCGaCGGCCUUAUc -3' miRNA: 3'- gC-GCGG-CUAUUCCGGCaGCUGGAGUA- -5' |
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19000 | 3' | -57.2 | NC_004684.1 | + | 12915 | 0.72 | 0.347535 |
Target: 5'- gGUGCCGGUGc-GCCGUCGGCCa--- -3' miRNA: 3'- gCGCGGCUAUucCGGCAGCUGGagua -5' |
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19000 | 3' | -57.2 | NC_004684.1 | + | 63666 | 0.71 | 0.364072 |
Target: 5'- cCGCGCCGcgcAGGCCGaUgGACCUgAUg -3' miRNA: 3'- -GCGCGGCuauUCCGGC-AgCUGGAgUA- -5' |
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19000 | 3' | -57.2 | NC_004684.1 | + | 67066 | 0.71 | 0.372543 |
Target: 5'- uCGCGCCGuacccgGUGcGGgCGUUGGCCUCGg -3' miRNA: 3'- -GCGCGGC------UAUuCCgGCAGCUGGAGUa -5' |
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19000 | 3' | -57.2 | NC_004684.1 | + | 736 | 0.71 | 0.389882 |
Target: 5'- gCGCGUCGGUGuccuugGGGUCGcCGugCUCGUc -3' miRNA: 3'- -GCGCGGCUAU------UCCGGCaGCugGAGUA- -5' |
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19000 | 3' | -57.2 | NC_004684.1 | + | 33159 | 0.7 | 0.398747 |
Target: 5'- gGCGUCaGUAcgcAGGCCcUCGACCUCGg -3' miRNA: 3'- gCGCGGcUAU---UCCGGcAGCUGGAGUa -5' |
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19000 | 3' | -57.2 | NC_004684.1 | + | 46507 | 0.7 | 0.398747 |
Target: 5'- uGCGCCGGgacaugcuGGCCGUgGACC-CGa -3' miRNA: 3'- gCGCGGCUauu-----CCGGCAgCUGGaGUa -5' |
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19000 | 3' | -57.2 | NC_004684.1 | + | 4993 | 0.7 | 0.398747 |
Target: 5'- gGUGCCGccGAGGCCGguggCGACCa--- -3' miRNA: 3'- gCGCGGCuaUUCCGGCa---GCUGGagua -5' |
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19000 | 3' | -57.2 | NC_004684.1 | + | 11616 | 0.7 | 0.40774 |
Target: 5'- gGCaCCGAgcuGGCCGUCGGCCg--- -3' miRNA: 3'- gCGcGGCUauuCCGGCAGCUGGagua -5' |
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19000 | 3' | -57.2 | NC_004684.1 | + | 48798 | 0.7 | 0.426102 |
Target: 5'- aGCGCUGGcAGGGCCGcCGcACgCUCAa -3' miRNA: 3'- gCGCGGCUaUUCCGGCaGC-UG-GAGUa -5' |
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19000 | 3' | -57.2 | NC_004684.1 | + | 62304 | 0.7 | 0.435466 |
Target: 5'- aGCGCCGcgcGGGCCuccgCGAUCUCAUc -3' miRNA: 3'- gCGCGGCuauUCCGGca--GCUGGAGUA- -5' |
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19000 | 3' | -57.2 | NC_004684.1 | + | 52229 | 0.7 | 0.435466 |
Target: 5'- gGCGUCGAUcAGGCCGUgGugC-CAc -3' miRNA: 3'- gCGCGGCUAuUCCGGCAgCugGaGUa -5' |
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19000 | 3' | -57.2 | NC_004684.1 | + | 37163 | 0.7 | 0.444947 |
Target: 5'- gCGCGCCGA--GGGCCacGUCGcGCCgagCAUc -3' miRNA: 3'- -GCGCGGCUauUCCGG--CAGC-UGGa--GUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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