miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19000 3' -57.2 NC_004684.1 + 29344 0.68 0.566411
Target:  5'- aGCGCUGG-GAGGCgGUgGACCUg-- -3'
miRNA:   3'- gCGCGGCUaUUCCGgCAgCUGGAgua -5'
19000 3' -57.2 NC_004684.1 + 37163 0.7 0.444947
Target:  5'- gCGCGCCGA--GGGCCacGUCGcGCCgagCAUc -3'
miRNA:   3'- -GCGCGGCUauUCCGG--CAGC-UGGa--GUA- -5'
19000 3' -57.2 NC_004684.1 + 48661 0.69 0.48398
Target:  5'- cCGCGCCGGaGAGGCCuUC-ACCgggCAUg -3'
miRNA:   3'- -GCGCGGCUaUUCCGGcAGcUGGa--GUA- -5'
19000 3' -57.2 NC_004684.1 + 64453 0.69 0.487974
Target:  5'- gCGCGCCGGacuggucgcagauguUGuagagcAGGCCGguggUGGCCUCGUu -3'
miRNA:   3'- -GCGCGGCU---------------AU------UCCGGCa---GCUGGAGUA- -5'
19000 3' -57.2 NC_004684.1 + 40098 0.69 0.493995
Target:  5'- aGCgGCCGAUcucguGGCCGUagcgggcgcuggCGGCCUCGg -3'
miRNA:   3'- gCG-CGGCUAuu---CCGGCA------------GCUGGAGUa -5'
19000 3' -57.2 NC_004684.1 + 65010 0.69 0.504104
Target:  5'- gGCGuuGGUGguguGGCCauaggCGACCUCGUg -3'
miRNA:   3'- gCGCggCUAUu---CCGGca---GCUGGAGUA- -5'
19000 3' -57.2 NC_004684.1 + 10323 0.68 0.524581
Target:  5'- gCGCGCCGcaacgcAGGCCGccaUCGACCcCGc -3'
miRNA:   3'- -GCGCGGCuau---UCCGGC---AGCUGGaGUa -5'
19000 3' -57.2 NC_004684.1 + 58102 0.68 0.525613
Target:  5'- gCGCGCCGAgcauGGCCGgguccgcgaacaacgCGACCg--- -3'
miRNA:   3'- -GCGCGGCUauu-CCGGCa--------------GCUGGagua -5'
19000 3' -57.2 NC_004684.1 + 60542 0.68 0.545367
Target:  5'- cCGCGcCCGGU---GCCGUCGAcacCCUCGa -3'
miRNA:   3'- -GCGC-GGCUAuucCGGCAGCU---GGAGUa -5'
19000 3' -57.2 NC_004684.1 + 33304 0.7 0.444947
Target:  5'- uCGCGCgGGU--GGCCucgcugaucauGUCGACCUCGc -3'
miRNA:   3'- -GCGCGgCUAuuCCGG-----------CAGCUGGAGUa -5'
19000 3' -57.2 NC_004684.1 + 62304 0.7 0.435466
Target:  5'- aGCGCCGcgcGGGCCuccgCGAUCUCAUc -3'
miRNA:   3'- gCGCGGCuauUCCGGca--GCUGGAGUA- -5'
19000 3' -57.2 NC_004684.1 + 52229 0.7 0.435466
Target:  5'- gGCGUCGAUcAGGCCGUgGugC-CAc -3'
miRNA:   3'- gCGCGGCUAuUCCGGCAgCugGaGUa -5'
19000 3' -57.2 NC_004684.1 + 40244 0.73 0.28685
Target:  5'- -uUGCCGGUcucGGGGCgGUCGACCUUGUa -3'
miRNA:   3'- gcGCGGCUA---UUCCGgCAGCUGGAGUA- -5'
19000 3' -57.2 NC_004684.1 + 41659 0.72 0.316095
Target:  5'- uGCGgCGuacgAAGGCCGggcCGACCUCGg -3'
miRNA:   3'- gCGCgGCua--UUCCGGCa--GCUGGAGUa -5'
19000 3' -57.2 NC_004684.1 + 44341 0.72 0.316095
Target:  5'- uGCGCuCGAUGAGGUCGUUGACg---- -3'
miRNA:   3'- gCGCG-GCUAUUCCGGCAGCUGgagua -5'
19000 3' -57.2 NC_004684.1 + 15061 0.72 0.32375
Target:  5'- gGaCGCCgGAUGAGGUCGaCGGCCUUAUc -3'
miRNA:   3'- gC-GCGG-CUAUUCCGGCaGCUGGAGUA- -5'
19000 3' -57.2 NC_004684.1 + 12915 0.72 0.347535
Target:  5'- gGUGCCGGUGc-GCCGUCGGCCa--- -3'
miRNA:   3'- gCGCGGCUAUucCGGCAGCUGGagua -5'
19000 3' -57.2 NC_004684.1 + 67066 0.71 0.372543
Target:  5'- uCGCGCCGuacccgGUGcGGgCGUUGGCCUCGg -3'
miRNA:   3'- -GCGCGGC------UAUuCCgGCAGCUGGAGUa -5'
19000 3' -57.2 NC_004684.1 + 33159 0.7 0.398747
Target:  5'- gGCGUCaGUAcgcAGGCCcUCGACCUCGg -3'
miRNA:   3'- gCGCGGcUAU---UCCGGcAGCUGGAGUa -5'
19000 3' -57.2 NC_004684.1 + 11616 0.7 0.40774
Target:  5'- gGCaCCGAgcuGGCCGUCGGCCg--- -3'
miRNA:   3'- gCGcGGCUauuCCGGCAGCUGGagua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.