miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19000 3' -57.2 NC_004684.1 + 736 0.71 0.389882
Target:  5'- gCGCGUCGGUGuccuugGGGUCGcCGugCUCGUc -3'
miRNA:   3'- -GCGCGGCUAU------UCCGGCaGCugGAGUA- -5'
19000 3' -57.2 NC_004684.1 + 796 0.69 0.474063
Target:  5'- aGCGCC----AGGCCGUCcaccggcggcuGACCUCGg -3'
miRNA:   3'- gCGCGGcuauUCCGGCAG-----------CUGGAGUa -5'
19000 3' -57.2 NC_004684.1 + 1219 0.7 0.444947
Target:  5'- gGCauGCCGu---GGCCGUCGACCaucUCGUg -3'
miRNA:   3'- gCG--CGGCuauuCCGGCAGCUGG---AGUA- -5'
19000 3' -57.2 NC_004684.1 + 1899 0.66 0.65198
Target:  5'- aGCagGCCGAUGAcaCCGgCGACCUCGc -3'
miRNA:   3'- gCG--CGGCUAUUccGGCaGCUGGAGUa -5'
19000 3' -57.2 NC_004684.1 + 2592 0.67 0.598339
Target:  5'- gGCGUCGuUGAGGCCGc---CCUCAUa -3'
miRNA:   3'- gCGCGGCuAUUCCGGCagcuGGAGUA- -5'
19000 3' -57.2 NC_004684.1 + 3035 0.68 0.566411
Target:  5'- gCGCGCCGAU--GGCC-UCgGugCUCGg -3'
miRNA:   3'- -GCGCGGCUAuuCCGGcAG-CugGAGUa -5'
19000 3' -57.2 NC_004684.1 + 4993 0.7 0.398747
Target:  5'- gGUGCCGccGAGGCCGguggCGACCa--- -3'
miRNA:   3'- gCGCGGCuaUUCCGGCa---GCUGGagua -5'
19000 3' -57.2 NC_004684.1 + 5963 0.68 0.566411
Target:  5'- cCGCGCCGGUGAgcgaccGGCCGagcaaguccCGGCCUgGc -3'
miRNA:   3'- -GCGCGGCUAUU------CCGGCa--------GCUGGAgUa -5'
19000 3' -57.2 NC_004684.1 + 6072 0.74 0.247041
Target:  5'- cCGCGCUGGUAGccgauGCCGggggCGGCCUCGUa -3'
miRNA:   3'- -GCGCGGCUAUUc----CGGCa---GCUGGAGUA- -5'
19000 3' -57.2 NC_004684.1 + 6092 0.67 0.586592
Target:  5'- cCGCGuCCGAUGgugcgccugagccAGGCCGg-GACUUCGc -3'
miRNA:   3'- -GCGC-GGCUAU-------------UCCGGCagCUGGAGUa -5'
19000 3' -57.2 NC_004684.1 + 6289 0.66 0.641249
Target:  5'- uCGCGCCGG--AGGCCaUCGACa---- -3'
miRNA:   3'- -GCGCGGCUauUCCGGcAGCUGgagua -5'
19000 3' -57.2 NC_004684.1 + 6786 0.74 0.247041
Target:  5'- uCGCGCCGAcgguGGCCagGUCGACCUg-- -3'
miRNA:   3'- -GCGCGGCUauu-CCGG--CAGCUGGAgua -5'
19000 3' -57.2 NC_004684.1 + 6918 0.68 0.523549
Target:  5'- uCGCGCCG-UAggccagcuccuccAGGCCGaCGGCgUCGUa -3'
miRNA:   3'- -GCGCGGCuAU-------------UCCGGCaGCUGgAGUA- -5'
19000 3' -57.2 NC_004684.1 + 8481 0.66 0.65198
Target:  5'- -aUGCCGucGAGGCCGUCGcggaaCUCGUg -3'
miRNA:   3'- gcGCGGCuaUUCCGGCAGCug---GAGUA- -5'
19000 3' -57.2 NC_004684.1 + 10323 0.68 0.524581
Target:  5'- gCGCGCCGcaacgcAGGCCGccaUCGACCcCGc -3'
miRNA:   3'- -GCGCGGCuau---UCCGGC---AGCUGGaGUa -5'
19000 3' -57.2 NC_004684.1 + 10756 0.68 0.545367
Target:  5'- gGCGuUCGGUGu-GCCgGUCGACCUCAc -3'
miRNA:   3'- gCGC-GGCUAUucCGG-CAGCUGGAGUa -5'
19000 3' -57.2 NC_004684.1 + 11616 0.7 0.40774
Target:  5'- gGCaCCGAgcuGGCCGUCGGCCg--- -3'
miRNA:   3'- gCGcGGCUauuCCGGCAGCUGGagua -5'
19000 3' -57.2 NC_004684.1 + 12840 0.76 0.186011
Target:  5'- cCGCGCgGGccaaGAGGgCGUCGACCUCGg -3'
miRNA:   3'- -GCGCGgCUa---UUCCgGCAGCUGGAGUa -5'
19000 3' -57.2 NC_004684.1 + 12888 0.68 0.545367
Target:  5'- gCGCGUCGucggcggGGGuGCCGUUGuCCUCGUu -3'
miRNA:   3'- -GCGCGGCua-----UUC-CGGCAGCuGGAGUA- -5'
19000 3' -57.2 NC_004684.1 + 12915 0.72 0.347535
Target:  5'- gGUGCCGGUGc-GCCGUCGGCCa--- -3'
miRNA:   3'- gCGCGGCUAUucCGGCAGCUGGagua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.