miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19000 5' -60.3 NC_004684.1 + 55848 0.66 0.535507
Target:  5'- cUCAuuCGUCGUCCucuGcGGGCCGGUgcaaCGGgGa -3'
miRNA:   3'- -GGU--GCAGCAGGu--C-CUCGGCCA----GCCgC- -5'
19000 5' -60.3 NC_004684.1 + 30628 0.66 0.525564
Target:  5'- cCCGCGacUgGUC--GGAGCCG-UCGGCGg -3'
miRNA:   3'- -GGUGC--AgCAGguCCUCGGCcAGCCGC- -5'
19000 5' -60.3 NC_004684.1 + 63037 0.66 0.525564
Target:  5'- aCCAuCGUCGgcgcgcgCCGcGcGCUGGUCGGCu -3'
miRNA:   3'- -GGU-GCAGCa------GGUcCuCGGCCAGCCGc -5'
19000 5' -60.3 NC_004684.1 + 36860 0.66 0.525564
Target:  5'- aCCAgCGUCGgcaCCGGGcgcGGCCcuGG-CGGCGu -3'
miRNA:   3'- -GGU-GCAGCa--GGUCC---UCGG--CCaGCCGC- -5'
19000 5' -60.3 NC_004684.1 + 64342 0.66 0.525564
Target:  5'- gCUugGUcaCGUCCuuGAacCCGGUCGGCGc -3'
miRNA:   3'- -GGugCA--GCAGGucCUc-GGCCAGCCGC- -5'
19000 5' -60.3 NC_004684.1 + 36765 0.66 0.525564
Target:  5'- gCCAgGgccgCGcCCGGugccGAcGCUGGUCGGCGg -3'
miRNA:   3'- -GGUgCa---GCaGGUC----CU-CGGCCAGCCGC- -5'
19000 5' -60.3 NC_004684.1 + 13674 0.66 0.524574
Target:  5'- gCACG--GUCCAGGAcauggugGCCGGUUcgGGCa -3'
miRNA:   3'- gGUGCagCAGGUCCU-------CGGCCAG--CCGc -5'
19000 5' -60.3 NC_004684.1 + 6350 0.67 0.515692
Target:  5'- -gGCGUUGUCCAu--GUCGG-CGGCGa -3'
miRNA:   3'- ggUGCAGCAGGUccuCGGCCaGCCGC- -5'
19000 5' -60.3 NC_004684.1 + 23772 0.67 0.514709
Target:  5'- gCCACGcUCugGUCCGGGccgaccaGGCCG-UCGGUGu -3'
miRNA:   3'- -GGUGC-AG--CAGGUCC-------UCGGCcAGCCGC- -5'
19000 5' -60.3 NC_004684.1 + 51783 0.67 0.505895
Target:  5'- cUCGCGguacUCGUCCAGGuAGucCCGGUCcacGGCc -3'
miRNA:   3'- -GGUGC----AGCAGGUCC-UC--GGCCAG---CCGc -5'
19000 5' -60.3 NC_004684.1 + 32256 0.67 0.505895
Target:  5'- gCGCGUCGgaCCuGuuGgCGGUCGGCGa -3'
miRNA:   3'- gGUGCAGCa-GGuCcuCgGCCAGCCGC- -5'
19000 5' -60.3 NC_004684.1 + 848 0.67 0.50492
Target:  5'- uCgGCGgUGUCCAGGAgcGCCGccagggcGUCGGUGu -3'
miRNA:   3'- -GgUGCaGCAGGUCCU--CGGC-------CAGCCGC- -5'
19000 5' -60.3 NC_004684.1 + 57399 0.67 0.50492
Target:  5'- gCCA-GUCGaCCGGGcagggcuGGCCGGggugCGGCu -3'
miRNA:   3'- -GGUgCAGCaGGUCC-------UCGGCCa---GCCGc -5'
19000 5' -60.3 NC_004684.1 + 63242 0.67 0.496179
Target:  5'- aCCugGUUcggaGUCU--GAGCCGGUgccCGGCGg -3'
miRNA:   3'- -GGugCAG----CAGGucCUCGGCCA---GCCGC- -5'
19000 5' -60.3 NC_004684.1 + 17641 0.67 0.486548
Target:  5'- gCACcUCGUCCAGGcGGuCCuGGUaGGCGa -3'
miRNA:   3'- gGUGcAGCAGGUCC-UC-GG-CCAgCCGC- -5'
19000 5' -60.3 NC_004684.1 + 48954 0.67 0.486548
Target:  5'- gCACGUCGgcgggCgGGGuGGCCGGggcgGGCGc -3'
miRNA:   3'- gGUGCAGCa----GgUCC-UCGGCCag--CCGC- -5'
19000 5' -60.3 NC_004684.1 + 29755 0.67 0.477007
Target:  5'- gUCugGUCGgccgcgCgCAGGAGCaCGucGUUGGCGg -3'
miRNA:   3'- -GGugCAGCa-----G-GUCCUCG-GC--CAGCCGC- -5'
19000 5' -60.3 NC_004684.1 + 21991 0.67 0.467559
Target:  5'- cCCGCG-CgGUCCAGGAgGCCauggGGcCGGUGc -3'
miRNA:   3'- -GGUGCaG-CAGGUCCU-CGG----CCaGCCGC- -5'
19000 5' -60.3 NC_004684.1 + 29002 0.67 0.467559
Target:  5'- aCACGUCGUCCGGucgaucAGCggCGGUcgccaCGGCGc -3'
miRNA:   3'- gGUGCAGCAGGUCc-----UCG--GCCA-----GCCGC- -5'
19000 5' -60.3 NC_004684.1 + 58205 0.68 0.458209
Target:  5'- gUCGCGUUGUUCGcGGAcCCGGccaugcUCGGCGc -3'
miRNA:   3'- -GGUGCAGCAGGU-CCUcGGCC------AGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.