miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19001 3' -63.1 NC_004684.1 + 23550 0.66 0.367369
Target:  5'- gCGGcAUCGGUcgcgGCCUggaCAGCcuGCCgGGCCg -3'
miRNA:   3'- -GCC-UAGUCG----CGGAg--GUCG--CGGgCCGG- -5'
19001 3' -63.1 NC_004684.1 + 51975 0.66 0.392207
Target:  5'- aGGGUggccaCGGUGUCggCCAucGCGCCCuGCCg -3'
miRNA:   3'- gCCUA-----GUCGCGGa-GGU--CGCGGGcCGG- -5'
19001 3' -63.1 NC_004684.1 + 1181 0.66 0.412848
Target:  5'- cCGGGUC-GCgGCCuggucaccgaucacgUCCAGCGCcgCCaGCCa -3'
miRNA:   3'- -GCCUAGuCG-CGG---------------AGGUCGCG--GGcCGG- -5'
19001 3' -63.1 NC_004684.1 + 3819 0.66 0.375527
Target:  5'- aGGAUCugcugGGCGCgUUCGGCGUgCCGaCCg -3'
miRNA:   3'- gCCUAG-----UCGCGgAGGUCGCG-GGCcGG- -5'
19001 3' -63.1 NC_004684.1 + 10793 0.66 0.375527
Target:  5'- aCGGcGUCGGCaCCguagcggcaUCCGGCgGCUgGGCCg -3'
miRNA:   3'- -GCC-UAGUCGcGG---------AGGUCG-CGGgCCGG- -5'
19001 3' -63.1 NC_004684.1 + 66804 0.66 0.367369
Target:  5'- gCGGAacuUCGGgGUCUCgaCGGUgGCCuCGGCCu -3'
miRNA:   3'- -GCCU---AGUCgCGGAG--GUCG-CGG-GCCGG- -5'
19001 3' -63.1 NC_004684.1 + 40481 0.66 0.383807
Target:  5'- uCGGcgGUCuGCGCCgagugcgCCAGCaCCUGGUUg -3'
miRNA:   3'- -GCC--UAGuCGCGGa------GGUCGcGGGCCGG- -5'
19001 3' -63.1 NC_004684.1 + 24020 0.66 0.392207
Target:  5'- aCGuGAUCGGUuCCggcaaGGUGCCCGGCg -3'
miRNA:   3'- -GC-CUAGUCGcGGagg--UCGCGGGCCGg -5'
19001 3' -63.1 NC_004684.1 + 54011 0.66 0.370618
Target:  5'- uGGAUCAcguuGUGCCUCCucGGCcuucguggcggguguGCCC-GCCg -3'
miRNA:   3'- gCCUAGU----CGCGGAGG--UCG---------------CGGGcCGG- -5'
19001 3' -63.1 NC_004684.1 + 24199 0.66 0.36656
Target:  5'- ----cCGGUGCCUgCGGUGCCCGacaucgcGCCg -3'
miRNA:   3'- gccuaGUCGCGGAgGUCGCGGGC-------CGG- -5'
19001 3' -63.1 NC_004684.1 + 49035 0.66 0.392207
Target:  5'- cCGGcgCAgGCuCCUCCuccucGGCagGCUCGGCCa -3'
miRNA:   3'- -GCCuaGU-CGcGGAGG-----UCG--CGGGCCGG- -5'
19001 3' -63.1 NC_004684.1 + 45242 0.66 0.392207
Target:  5'- -uGGUCAG-GCCcggcagCCAGCGCUggucgCGGCCc -3'
miRNA:   3'- gcCUAGUCgCGGa-----GGUCGCGG-----GCCGG- -5'
19001 3' -63.1 NC_004684.1 + 45212 0.66 0.392207
Target:  5'- gCGG--CAGCGCgUCCaugcGGCGCuuGGUg -3'
miRNA:   3'- -GCCuaGUCGCGgAGG----UCGCGggCCGg -5'
19001 3' -63.1 NC_004684.1 + 25744 0.66 0.374706
Target:  5'- aCGGuguguaCGGCGCgaUCCccggccuGGCGUCCGGCUc -3'
miRNA:   3'- -GCCua----GUCGCGg-AGG-------UCGCGGGCCGG- -5'
19001 3' -63.1 NC_004684.1 + 40376 0.66 0.391361
Target:  5'- gGGGccUCGGCgguggcgGCCUUCGGCaGgCCGGUCa -3'
miRNA:   3'- gCCU--AGUCG-------CGGAGGUCG-CgGGCCGG- -5'
19001 3' -63.1 NC_004684.1 + 51172 0.66 0.367369
Target:  5'- uGGccgauGCGCCgggCCAuggaccgcGCGCCCuGGCCg -3'
miRNA:   3'- gCCuagu-CGCGGa--GGU--------CGCGGG-CCGG- -5'
19001 3' -63.1 NC_004684.1 + 1086 0.66 0.375527
Target:  5'- aCGuGAUCGGUGaCCaggCC-GCGaCCCGGCg -3'
miRNA:   3'- -GC-CUAGUCGC-GGa--GGuCGC-GGGCCGg -5'
19001 3' -63.1 NC_004684.1 + 36246 0.66 0.391361
Target:  5'- uGGcgUGGCcaagagcuaugagGUgUCCGGCgGCCUGGCCa -3'
miRNA:   3'- gCCuaGUCG-------------CGgAGGUCG-CGGGCCGG- -5'
19001 3' -63.1 NC_004684.1 + 43407 0.66 0.392207
Target:  5'- aCGGGUCGcCGCCgccgaacCCgAG-GCCCGGCg -3'
miRNA:   3'- -GCCUAGUcGCGGa------GG-UCgCGGGCCGg -5'
19001 3' -63.1 NC_004684.1 + 13789 0.66 0.375527
Target:  5'- ----cCuGCGCCUCCAGCgcggugucGCCCGcaacGCCa -3'
miRNA:   3'- gccuaGuCGCGGAGGUCG--------CGGGC----CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.