miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19001 3' -63.1 NC_004684.1 + 53245 0.7 0.230323
Target:  5'- aCGGGUaggugauccCGGCGCgCUCCGGUGUcaUCGGCUc -3'
miRNA:   3'- -GCCUA---------GUCGCG-GAGGUCGCG--GGCCGG- -5'
19001 3' -63.1 NC_004684.1 + 53803 0.7 0.198575
Target:  5'- gGGAUCGgguuGCGCCUCCAugcgggcguGCGCUuccaGGCUg -3'
miRNA:   3'- gCCUAGU----CGCGGAGGU---------CGCGGg---CCGG- -5'
19001 3' -63.1 NC_004684.1 + 25377 0.7 0.20871
Target:  5'- cCGG-UCAGCGCCUacgCCGccGCGCacagcggCGGCCa -3'
miRNA:   3'- -GCCuAGUCGCGGA---GGU--CGCGg------GCCGG- -5'
19001 3' -63.1 NC_004684.1 + 6016 0.7 0.213944
Target:  5'- uCGGAcgCGGUgGCCUuuaggccgCCAGCGCCucgCGGCCc -3'
miRNA:   3'- -GCCUa-GUCG-CGGA--------GGUCGCGG---GCCGG- -5'
19001 3' -63.1 NC_004684.1 + 61693 0.7 0.213944
Target:  5'- uGGcGUCGGUGCCgugggcaggCCGG-GCCCcGGCCa -3'
miRNA:   3'- gCC-UAGUCGCGGa--------GGUCgCGGG-CCGG- -5'
19001 3' -63.1 NC_004684.1 + 21252 0.7 0.216069
Target:  5'- aGGuguUCGuGCGCCaggUCAaccaccccggcacgcGCGCCCGGCCg -3'
miRNA:   3'- gCCu--AGU-CGCGGa--GGU---------------CGCGGGCCGG- -5'
19001 3' -63.1 NC_004684.1 + 58843 0.7 0.224749
Target:  5'- gCGG-UCGGCGCacaggUCCAccuCGUCCGGCCc -3'
miRNA:   3'- -GCCuAGUCGCGg----AGGUc--GCGGGCCGG- -5'
19001 3' -63.1 NC_004684.1 + 6189 0.7 0.224749
Target:  5'- cCGGGcaGGUacaugucgaugGCCUCCGGCGCgaucUCGGCCa -3'
miRNA:   3'- -GCCUagUCG-----------CGGAGGUCGCG----GGCCGG- -5'
19001 3' -63.1 NC_004684.1 + 60026 0.7 0.224749
Target:  5'- gGGGUCu-CGUCUCCAGCaucuGCCaGGCCu -3'
miRNA:   3'- gCCUAGucGCGGAGGUCG----CGGgCCGG- -5'
19001 3' -63.1 NC_004684.1 + 965 0.7 0.198575
Target:  5'- gCGGGUCauuGGCGaCUCCGGgGCguucUCGGCCa -3'
miRNA:   3'- -GCCUAG---UCGCgGAGGUCgCG----GGCCGG- -5'
19001 3' -63.1 NC_004684.1 + 62286 0.7 0.198575
Target:  5'- aGGuccaGGCGCugCUCCAGCGCCgcgcgGGCCu -3'
miRNA:   3'- gCCuag-UCGCG--GAGGUCGCGGg----CCGG- -5'
19001 3' -63.1 NC_004684.1 + 58419 0.71 0.18887
Target:  5'- cCGGAaccccgcCGGuUGCCUCCGGC-CCCGuGCCg -3'
miRNA:   3'- -GCCUa------GUC-GCGGAGGUCGcGGGC-CGG- -5'
19001 3' -63.1 NC_004684.1 + 50271 0.75 0.093725
Target:  5'- gGGGUCGuCGCUggCCAGCGCCaGGCCc -3'
miRNA:   3'- gCCUAGUcGCGGa-GGUCGCGGgCCGG- -5'
19001 3' -63.1 NC_004684.1 + 1227 0.74 0.115803
Target:  5'- uCGGccUCGGCgGCCUggUCGGuCGCCCGGCCc -3'
miRNA:   3'- -GCCu-AGUCG-CGGA--GGUC-GCGGGCCGG- -5'
19001 3' -63.1 NC_004684.1 + 50027 0.73 0.131977
Target:  5'- uCGGcggCAGCGUggCCGGUGCCUGGCUc -3'
miRNA:   3'- -GCCua-GUCGCGgaGGUCGCGGGCCGG- -5'
19001 3' -63.1 NC_004684.1 + 56181 0.72 0.162225
Target:  5'- aCGG--CGGCGCUaUCgAGCGCCCGGUg -3'
miRNA:   3'- -GCCuaGUCGCGG-AGgUCGCGGGCCGg -5'
19001 3' -63.1 NC_004684.1 + 54258 0.72 0.166418
Target:  5'- cCGGGaCAGCuCCUcagCCAGCGCCgccaccCGGCCg -3'
miRNA:   3'- -GCCUaGUCGcGGA---GGUCGCGG------GCCGG- -5'
19001 3' -63.1 NC_004684.1 + 39276 0.71 0.170708
Target:  5'- cCGGuUCAGCGCCUCUAuCGaCUCGGUg -3'
miRNA:   3'- -GCCuAGUCGCGGAGGUcGC-GGGCCGg -5'
19001 3' -63.1 NC_004684.1 + 2918 0.71 0.184176
Target:  5'- uGGAaguauuUCgaGGUGCCUCCGGUGCCgagcaccgaGGCCa -3'
miRNA:   3'- gCCU------AG--UCGCGGAGGUCGCGGg--------CCGG- -5'
19001 3' -63.1 NC_004684.1 + 62123 0.71 0.188396
Target:  5'- uGGcGUCGGUgaacucguugcacGCCUCgCcGUGCCCGGCCu -3'
miRNA:   3'- gCC-UAGUCG-------------CGGAG-GuCGCGGGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.